write.FPWM: Writes the FPWM in transfact format

In rtmag/FPWM: Creation of Forked-Position Weight Matrices, a graph model of multiple PWMs.

Description

This function saves the FPWM in transfact format.

Usage

write.FPWM(FPWM = NULL, format = "transfac", fileName = NULL)

Arguments

FPWM	FPWM object.
format	the "transfac" option will output a standard transfact matrix per binding partner. The "FPWMtransfac" prints a single matrix with all the binding partners in FPWM format.
fileName	name of the file where the FPWM is going to be written.

Value

A PDF file with the cofactorReport.

Examples

write.FPWM(FPWM = fpwm, format = "transfac", fileName = "FPWM.transfact" )
write.FPWM(FPWM = fpwm, format = "FPWMtransfac", fileName = "FPWM.FPWMtransfac" )

rtmag/FPWM documentation built on March 23, 2020, 12:46 a.m.