API for rtmag/forkedTF
Creation of Forked-Position Weight Matrices, a graph model of multiple PWMs.
| Global functions | |
|---|---|
| .convertDF_to_GRanges | Source code |
| .get_enriched_cofactors | Source code |
| BetaAdder | Source code |
| ConvertToFTRANSFAC | Source code |
| FPWMcofactorReport_ui | Source code |
| MatrixAdder | Source code |
| ModifyBetaFormat | Source code |
| createFPWM | Man page Source code |
| extractEnrichment | Man page |
| formBetaScoreFromSeq | Source code |
| formMatrixFromSeq | Source code |
| importChromSizes | Man page Source code |
| intersectPeakMatrix | Man page Source code |
| loadChromFile | Man page Source code |
| loadChromSizes | Man page Source code |
| miniCofactorReport | Man page Source code |
| plotFPWM | Man page Source code |
| shuffle | Man page Source code |
| shuffleUniverse | Source code |
| shuffleUniverseByChrom | Source code |
| write.FPWM | Man page Source code |
