API for ruppinlab/gembox
In-house toolbox for genome-scale metabolic modeling (GEM) for the Ruppin Lab
| Global functions | |
|---|---|
| .onLoad | Source code |
| achr | Source code |
| all2idx | Source code |
| de.dt2dflux | Source code |
| de2dflux | Source code |
| df.fva | Source code |
| df.fva.x2 | Source code |
| df.wilcox | Source code |
| exprs2fluxes | Source code |
| exprs2fluxes.s | Source code |
| exprs2int | Source code |
| fca | Source code |
| form.gimme | Source code |
| form.imat | Source code |
| form.imat.dflux | Source code |
| form.imat.dflux.mc | Source code |
| form.imat.dflux0 | Source code |
| form.imat.dv0 | Source code |
| form.imat.mc | Source code |
| form.lee.smallbone | Source code |
| form.metal | Source code |
| form.mta | Source code |
| fva | Source code |
| fva1 | Source code |
| genes2rxns | Source code |
| get.biomass.idx | Source code |
| get.boundary.rxns | Source code |
| get.cmets | Source code |
| get.default.pars | Source code |
| get.diff.flux | Source code |
| get.essential.rxns | Source code |
| get.imat.opt.dflux.int | Source code |
| get.imat.opt.dv0.int | Source code |
| get.imat.opt.flux.int | Source code |
| get.metal.score | Source code |
| get.mta.score | Source code |
| get.norm.range.max | Source code |
| get.norm.range.min | Source code |
| get.opt.flux | Source code |
| get.opt.fluxes | Source code |
| get.opt.pnts | Source code |
| get.orth.pnts | Source code |
| get.ortho.vec | Source code |
| get.pars | Source code |
| get.prime.rxns | Source code |
| get.rand.pnts | Source code |
| get.rxn.equations | Source code |
| get.transport.info | Source code |
| get.xopt | Source code |
| gimme | Source code |
| imat | Source code |
| imat.dflux.mc | Source code |
| imat.dv0 | Source code |
| imat.mc | Source code |
| imat.mode1 | Source code |
| imat.mode2 | Source code |
| imat2 | Source code |
| join.models | Source code |
| lee.smallbone | Source code |
| make.conjunct.model | Source code |
| map.colors | Source code |
| mep | Source code |
| mepc | Source code |
| metal | Source code |
| mets2rxns | Source code |
| minimize.dflux | Source code |
| mmetal | Source code |
| moma | Source code |
| moma2 | Source code |
| mta | Source code |
| mta.moma | Source code |
| plot.fluxes | Source code |
| plot.model | Source code |
| plot.model1 | Source code |
| prep.model.for.fca | Source code |
| prepare.model.prime | Source code |
| prime | Source code |
| read.matlab.model | Source code |
| read.sbml.model | Source code |
| rm.fixed.rxns | Source code |
| rmetal | Source code |
| rmta | Source code |
| run.imat | Source code |
| run.imat.dflux | Source code |
| run.imat.dv0 | Source code |
| run.imat.mc | Source code |
| run.ko.screen | Source code |
| run.metal | Source code |
| run.mta | Source code |
| run.prime | Source code |
| rxns2genes | Source code |
| rxns2mets | Source code |
| sample.model | Source code |
| sample.warmup.pnts | Source code |
| set.cell.fractions | Source code |
| solve.model | Source code |
| solver | Source code |
| subsystems2gsets | Source code |
| update.model.imat | Source code |
| update.model.imat.dflux | Source code |
| update.model.imat.dv0 | Source code |
| update.model.imat.mc | Source code |
