define_annotation_colours: define_annotation_colours: make a named list of colour...

In russHyde/functionalheatmap:

Description

There should be no overlap between the names defined in 'boolean_var_names' and the 'names' of the list 'custom_colour_list' since any given variable can have it's colour-mapping set at most one time.

Usage

define_annotation_colours(boolean_var_names, custom_colour_list = list(),
  true_colour = "black", false_colour = "grey")

Arguments

boolean_var_names	a character vector. each of the entries corresponds to a boolean variable that will be presented in the heatmap. Boolean state will be indicated using true_colour and false_colour. If you want more control for specific boolean vars, use 'boolean_colour' and 'custom_colour_list'
custom_colour_list	a named list. Each entry corresponds to an annotation variable for a heatmaps rows or columns. The names should match an annotation variable. The values may be functions or named vectors mapping observable values for the annotation variable to a colour.
true_colour, false_colour	default colours for any TRUE/FALSE variables that are present in 'boolean_var_names'

russHyde/functionalheatmap documentation built on July 9, 2019, 10:30 p.m.