Files in ruthkr/greatR
Gene Registration from Expression and Time-Courses in R
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/compare_dynamics.R
R/distance.R
R/greatR-package.R
R/optimisation.R
R/plots.R
R/process_data.R
R/register.R
R/stretch_and_shift.R
R/summary.R
R/utils-calcs.R
R/utils-data-table.R
R/utils-plots.R
R/utils.R
README.Rmd
README.md
cran-comments.md
greatR.Rproj
inst/extdata/arabidopsis_SOC1_data.csv
inst/extdata/brapa_SOC1_data.csv
inst/extdata/brapa_arabidopsis_data.csv
inst/extdata/brapa_arabidopsis_registration.rds
inst/extdata/sample_data/arabidopsis_expression.rds
inst/extdata/sample_data/arabidopsis_expression_5genes.rds
inst/extdata/sample_data/brassica_rapa_expression.rds
inst/extdata/sample_data/brassica_rapa_expression_5genes.rds
inst/extdata/sample_data/id_table.rds
inst/extdata/sample_data/id_table_5genes.rds
man/calculate_distance.Rd
man/figures/greatR_workflow.png
man/figures/logo.png
man/get_approximate_stretch.Rd
man/plot.Rd
man/register.Rd
man/summary.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-dynamics.R
tests/testthat/test-optimisation.R
tests/testthat/test-registration.R
tests/testthat/test-results.R
tests/testthat/test-utils-calcs.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/data-requirement.Rmd
vignettes/figures/input_diagram.png
vignettes/figures/input_list_tables.png
vignettes/figures/input_list_vectors.png
vignettes/figures/input_table.png
vignettes/figures/registration_manual_diagram.png
vignettes/figures/registration_opt_diagram.png
vignettes/figures/registration_params_table.png
vignettes/figures/visualisation_diagram.png
vignettes/process-results.Rmd
vignettes/register-data-manually.Rmd
vignettes/register-data.Rmd
