rwang14/implant: A High-throughput Phenotyping Pipeline for Image Processing and Functional Growth Curve Analysis

The package ``implant" is used for both image processing and functional data analysis, which is able to provide statistical inference for the plant traits directly from the input images. For image processing, the package provides methods including thresholding, hidden Markov random field model,etc. For the growth curve analysis, this package can produce nonparametric curve fitting with its confidence region for plant growth. A functional ANOVA model to test for the treatment and genotype effects of the growth curve dynamics is also provided.

Getting started

Package details

AuthorRonghao Wang, Yumou Qiu, Yuzhen Zhou, Yuhang Xu, James Schnable
MaintainerRonghao Wang <[email protected]>
LicenseGPL (>= 2)
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("rwang14/implant")
rwang14/implant documentation built on Dec. 9, 2019, 6:36 p.m.