rwang14/implant: A High-throughput Phenotyping Pipeline for Image Processing and Functional Growth Curve Analysis
The package "implant" includes functionality for image processing and functional data analysis, which is able to provide statistical growth curve analysis for plant traits extracted from the input images. For image processing, the package provides methods including thresholding, hidden Markov random field model, etc. For the growth curve analysis, this package can produce nonparametric curve fitting with its confidence region. A functional ANOVA model to test for the treatment and genotype effects on the growth curve dynamics is also provided.
Getting started
Browse package contents
Package details |
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| Author | Ronghao Wang, Yumou Qiu, Yuzhen Zhou, Yuhang Xu, James Schnable |
| Maintainer | Ronghao Wang <rhwang64@gmail.com> |
| License | GPL (>= 2) |
| Version | 0.1.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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