| cols | Extracts the vector of colours from a pdata object |
| combine.pdata | Combines pdata objects corresponding to multiple screens |
| combine.screens | Combines different screen data objects into a single one. |
| comp.scores | Computes lethality scores for replicates with the same... |
| comp.scores.diff.ann | Computes lethality scores for replicates with different... |
| get.all.qnorm | Computes normalized data for all observed scores |
| get.inv.set | Wrapper where the core set is created |
| get.inv.set.prop | Computes proportion of scores included in core sets |
| get.leth.scores | Computes lethality scores per replicate in an rscreen.data... |
| get.list.res | Selects lethality scores subsets per feature type |
| get.pdata | Reads phenotypic data from a tab-delimited file |
| get.perc | Computes percentiles for observations in the core set |
| get.perc.qnorm | Quantile-normalizes percentiles for observations in the core... |
| get.qnorm | Quantile-normalizes screen data using given core sets |
| get.rscreenorm | Quantile-normalizes screen data using core sets |
| get.th.inv.set | Compute thresholds that define core sets per replicate |
| get.wtype | Extract well type from data_ann and format it as matrix if... |
| hasWtype | Checks if an rscreen.object has a well type variable |
| mypred.lm | Given a fit object and a new data, yields predictions of the... |
| mysplit | Splits and extracts single value from each entry in a vector... |
| nc.screen | Gets the number of replicate in the rscreen.object |
| nr.screen | Gets the number of features in the rscreen.object |
| nwt | Extracts the number of well types |
| pdensity.column | Plot density of each column in a dataset. |
| pdmw | Plot density of each replicate in a dataset, together for... |
| pdw | Plot density of each column in a dataset, using only one well... |
| read.screen.data | Reads screen data from a tab-delimited file |
| scr.ann | Extracts the annotation data of an rscreen object |
| scr.data | Extracts the screen data of an rscreen object |
| scr.names | Extracts sample names of an rscreen object |
| sel.rep | Selects densities to be used. |
| sel.scores.inv.set | Creates an object indicating observations in core set |
| var.in.colour | Creates a colour variable corresponding to a factor. |
