combine.pdata: Combines pdata objects corresponding to multiple screens
In rxmenezes/rscreenorm: Normalization of Multiple Genetic Screens Data
Description
Usage
Arguments
Value
See Also
Examples
Description
combine.pdata combines pdata from multiple screens, already read in
using get.pdata into a single pdata object. Variables are combined to allow for
using them for plots later on. Variable names are standardized to allow for
combining all observations smoothly. Other variables that exist in one pdata and not in
the other, receive NA for the extra observations.
Usage
1
combine.pdata(list_pdata)
Arguments
list_pdata
a list of pdata objects, read in using get.pdata
Value
A list containing the stacked pdata objects, a single colour variable coding for the cell line variable, as well as
a character vector with the variable names containing replicate names, cell line ids and treatment/condition.
See Also
read.screen.data to read in screen data, combine.screens
to combine data from multiple screens, and get.leth.scores to compute scores
that make observations in different screens comparable.
Examples
1
# See vignette
rxmenezes/rscreenorm documentation built on May 15, 2019, 1:19 p.m.
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Description Usage Arguments Value See Also Examples
Description
combine.pdata combines pdata from multiple screens, already read in
using get.pdata into a single pdata object. Variables are combined to allow for
using them for plots later on. Variable names are standardized to allow for
combining all observations smoothly. Other variables that exist in one pdata and not in
the other, receive NA for the extra observations.
Usage
1 | combine.pdata(list_pdata)
|
Arguments
list_pdata |
a list of pdata objects, read in using get.pdata |
Value
A list containing the stacked pdata objects, a single colour variable coding for the cell line variable, as well as a character vector with the variable names containing replicate names, cell line ids and treatment/condition.
See Also
read.screen.data to read in screen data, combine.screens
to combine data from multiple screens, and get.leth.scores to compute scores
that make observations in different screens comparable.
Examples
1 | # See vignette
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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