cades_JuvOutmigrant: Format juvenile out-migrant DES tables.

In ryankinzer/cuyem: Snake River Basin Anadromous Fish Summaries and Metric Estimation

Format juvenile out-migrant DES tables.

Description

Format juvenile abundance and survival data generated from get_JuvenileEstimates for the coordinated assessments juvenile outmigrant and juvenile outmigrant detail DES tables. The function requires an odbc connection from behind the NPT firewall to download CAX metadata tables from the CDMS database. Additionally, if a dataframe is not supplied a connection to https://cdms.nptfisheries.org using cdmsR::cdmsLogin() is also required.

Usage

cades_JuvOutmigrant(df, detail_meta, smoltEq_meta, alpha = c("0.05", "0.10"))

Arguments

df	lifestage dataframe output from get_JuvenileEstimates.
detail_meta	CA DES juvenile outmigrant detail metadata
smoltEq_meta	CA DES juvenile outmigrant metadata
alpha	Type I error rate. Default is set at 0.05 to produce 95% confidence intervals.

Value

a list with coordinated assessments juvenile outmigrant and juvenile outmigrant detail DES tables

Examples

cdmsR::cdmsLogin('your_username', 'your_password')
df <- get_JUVests()
con <- RODBC::odbcConnect(dsn = 'data source', uid = 'your_username', pwd = 'your_password')
cades_JuvOutmigrant(df, odbc_connection = con)

ryankinzer/cuyem documentation built on April 20, 2024, 2:10 p.m.