sum_carcassAge: Carcass Age Data

In ryankinzer/cuyem: Snake River Basin Anadromous Fish Summaries and Metric Estimation

Carcass Age Data

Description

Add scale, age fin, CWT, PIT and VIE age data to carcasses. Scale and age fin data is stored in the CDMS age summary dataset and connected to carcasses using stream name, survey date and sample number. CWT, PIT and VIE age data is supplied by the user and connect through code numbers (CWT and PIT) and stream name and return year for VIE marks.

Usage

sum_carcassAge(
  carcass_data,
  age_data = NULL,
  rmis_codes = NULL,
  pit_codes = NULL,
  vie_marks = NULL
)

Arguments

carcass_data	cleaned CDMS carcass dataset
age_data	cleaned CDMS age summary dataset
rmis_codes	RMIS release coded wire codes
pit_codes	PTAGIS tagging detail query
vie_marks	VIE marks applied by release year and potential return year

Author(s)

Ryan N. Kinzer

Examples

car_dat <- getDatasetView(datastoreID = 79)
car_dat <- clean_carcassData(car_dat)
age_dat <- getDatasetView(datastoreID = 80)
sum_carcassAge(car_dat, age_dat)

ryankinzer/cuyem documentation built on April 20, 2024, 2:10 p.m.