Files in s1060046/OmicsEO
collection of scripts for Omics analysis
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
OmicsEO.Rproj
R/.DS_Store
R/add_genename.R
R/analyse_fmrp.R
R/collapse_to_gene.R
R/deseq_plot_qc.R
R/do_DEP.R
R/do_deseq.R
R/do_gsea.R
R/getGOterms.R
R/get_biomart.R
R/get_deseq_res.R
R/input_featurecounts.R
R/input_kallisto.R
R/load_clean_p2.R
R/make_conversion_table.R
R/networks.R
R/prep_for_deseq.R
R/test_diff_sangedit.R
README.md
man/.DS_Store
man/add_genename.Rd
man/collapse_to_gene.Rd
man/deseq_plot_qc.Rd
man/do_deseq.Rd
man/do_gsea.Rd
man/get_deseq_res.Rd
man/input_featurecounts.Rd
man/input_kallisto.Rd
man/make_conversion_table.Rd
man/networks.Rd
man/prep_for_deseq.Rd
raw_data/.DS_Store
raw_data/Empirical_5UTR/Original_utrs.csv
raw_data/Empirical_5UTR/folding_energy.rds
raw_data/Empirical_5UTR/output_Comb_transcript_gene_dist.rds
raw_data/Empirical_5UTR/output_Comb_transcript_gene_final.rds
raw_data/gene_list/FMRP_targets_Sawicka_CA1.csv
raw_data/gene_list/Sept4.txt
raw_data/gene_list/detected_gene_info_unique_fmrp.rds
raw_data/gene_list/master.Ribosome_protein_list.csv
raw_data/gene_list/master.SFARI.csv
raw_data/gene_list/nd1.txt
raw_data/gene_list/pcp2.txt
