do_deseq: do_deseq
In s1060046/OmicsEO: collection of scripts for Omics analysis
Description
makes DESeq2 object
Usage
1
do_deseq(count_data, sample_data, design_formula, low_count_filter = 0)
Arguments
count_data
countdata, from prep_for_deseq function
sample_data
meta data
low_count_filter
filter for low counts, will remove genes with average counts < filter. Defult = 0
desing_formula
design formula for comparison
s1060046/OmicsEO documentation built on Dec. 22, 2021, 9:10 p.m.
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Description
makes DESeq2 object
Usage
1 | do_deseq(count_data, sample_data, design_formula, low_count_filter = 0)
|
Arguments
count_data |
countdata, from prep_for_deseq function |
sample_data |
meta data |
low_count_filter |
filter for low counts, will remove genes with average counts < filter. Defult = 0 |
desing_formula |
design formula for comparison |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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