Files in sa-lee/plyranges

A fluent interface for manipulating GenomicRanges

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/issue_template.md NEWS.md R/class-AnchoredRanges.R R/class-DeferredGenomicRanges.R R/class-GroupedRanges.R R/class-Operator.R R/dplyr-arrange.R R/dplyr-filter.R R/dplyr-groups.R R/dplyr-mutate.R R/dplyr-select.R R/dplyr-slice.R R/dplyr-summarize.R R/endo-coverage.R R/endo-tile.R R/io-bam.R R/io-bed.R R/io-bigwig.R R/io-gff.R R/io-wig.R R/methods-DeferredGenomicRanges.R R/methods-Operator.R R/plyranges.R R/ranges-add-distance.R R/ranges-anchors.R R/ranges-arithmetic-flank.R R/ranges-arithmetic-setters.R R/ranges-arithmetic-shift.R R/ranges-arithmetic-stretch.R R/ranges-bind.R R/ranges-chop.R R/ranges-colwise.R R/ranges-construct.R R/ranges-disjoin.R R/ranges-eval-quo.R R/ranges-eval.R R/ranges-expand.R R/ranges-genomeinfo.R R/ranges-join-follow.R R/ranges-join-nearest.R R/ranges-join-precede.R R/ranges-overlap-count.R R/ranges-overlap-filter.R R/ranges-overlap-find.R R/ranges-overlap-groups.R R/ranges-overlap-joins-intersect.R R/ranges-overlap-joins-outer.R R/ranges-overlap-self-joins.R R/ranges-pairs.R R/ranges-rangewise-setops.R R/ranges-reduce.R R/ranges-setops.R R/reexports.R README.Rmd README.md man/add-nearest-distance.Rd man/as_ranges.Rd man/compute_coverage.Rd man/element-setops.Rd man/filter-ranges.Rd man/group_by-ranges.Rd man/io-bam-read.Rd man/io-bed-read.Rd man/io-bed-write.Rd man/io-bigwig-read.Rd man/io-bigwig-write.Rd man/io-gff-read.Rd man/io-gff-write.Rd man/io-wig-read.Rd man/io-wig-write.Rd man/mutate-ranges.Rd man/n.Rd man/n_distinct.Rd man/overlap-joins.Rd man/overscope_ranges.Rd man/plyranges-package.Rd man/ranges-anchor.Rd man/ranges-arrange.Rd man/ranges-bind.Rd man/ranges-chop.Rd man/ranges-class.Rd man/ranges-construct.Rd man/ranges-count-overlaps.Rd man/ranges-deferred.Rd man/ranges-disjoin.Rd man/ranges-expand.Rd man/ranges-filter-overlaps.Rd man/ranges-flank.Rd man/ranges-follow.Rd man/ranges-info.Rd man/ranges-interweave.Rd man/ranges-names.Rd man/ranges-nearest.Rd man/ranges-overlaps-self.Rd man/ranges-overlaps.Rd man/ranges-pairs.Rd man/ranges-precede.Rd man/ranges-reduce.Rd man/ranges-select.Rd man/ranges-setops.Rd man/ranges-setters.Rd man/ranges-shift.Rd man/ranges-summarise.Rd man/ranges-tile.Rd man/slice-ranges.Rd man/stretch.Rd man/tidyverse-reexports.Rd tests/testthat.R tests/testthat/test-add-nearest-distance.R tests/testthat/test-anchor.R tests/testthat/test-bind.R tests/testthat/test-colwise.R tests/testthat/test-construction.R tests/testthat/test-coverage.R tests/testthat/test-disjoin.R tests/testthat/test-filter-by-overlap.R tests/testthat/test-filter.R tests/testthat/test-flank.R tests/testthat/test-groups.R tests/testthat/test-io-bam.R tests/testthat/test-io-bed.R tests/testthat/test-io-bedGraph.R tests/testthat/test-io-bw.R tests/testthat/test-io-gff.R tests/testthat/test-io-wig.R tests/testthat/test-join-distance.R tests/testthat/test-nearest.R tests/testthat/test-ojoins.R tests/testthat/test-overlaps.R tests/testthat/test-reduce.R tests/testthat/test-select.R tests/testthat/test-set-width.R tests/testthat/test-shift.R tests/testthat/test-slice.R tests/testthat/test-stretch.R tests/testthat/test-unnest.R vignettes/an-introduction.Rmd