io-gff-write: Write a GFF(123) file

In sa-lee/plyranges: A fluent interface for manipulating GenomicRanges

Write a GFF(123) file

Description

This is a lightweight wrapper to the export family of functions defined in rtracklayer.

Usage

write_gff(x, file, index = FALSE)

write_gff1(x, file, index = FALSE)

write_gff2(x, file, index = FALSE)

write_gff3(x, file, index = FALSE)

Arguments

x	A GRanges object
file	Path or connection to write to
index	If TRUE the output file will be compressed and indexed using bgzf and tabix.

Value

The write function returns a GFFFile object invisibly

See Also

rtracklayer::GFFFile()

Examples

## Not run: 
 test_path <- system.file("tests", package = "rtracklayer")
 test_gff3 <- file.path(test_path, "genes.gff3")
 gr <- read_gff3(test_gff3)
 out_gff3 <- file.path(tempdir(), "test.gff3")
 write_gff3(gr, out_gff3)
 read_gff3(out_gff3)

## End(Not run)

sa-lee/plyranges documentation built on April 15, 2024, 12:25 p.m.