join_parts: Expand exonic/intronic parts and intersect with ranges

In sa-lee/superintronic: Tools for Working with Intron Signal

Description

Expand exonic/intronic parts and intersect with ranges

Usage

join_parts(x, parts)

Arguments

x	a GRanges object
parts	an annotation GRanges from collect_parts()

Details

This is a wrapper to unnest_parts() and plyranges::join_overlap_intersect(). It restricts the GRanges object x to the ranges that intersect the exonic_parts and intronic_parts columns from parts, the result is a GRanges object with additional columns:

• gene_id, the gene_id from features corresponding to an exon/intron.

• feature_type, whether the range corresponds to an exon or intro feature.

• feature_rank, the rank of the exon/intron feature within a gene.

• feature_length, the width of the exon/intron

• feature_strand, the strand of the exon/intron

Value

a GRanges object

sa-lee/superintronic documentation built on Feb. 18, 2020, 10:36 a.m.