Files in saeyslab/CytoNorm
Normalisation of cytometry data measured across multiple batches
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/CytoNorm.R
R/QuantileNorm.R
R/evaluation.R
R/helperFunctions.R
R/plotDensities.R
R/plotSplines.R
README.md
inst/extdata/Gates_PTLG021_Unstim_Control_1.fcs
inst/extdata/Gates_PTLG021_Unstim_Control_2.fcs
inst/extdata/Gates_PTLG028_Unstim_Control_1.fcs
inst/extdata/Gates_PTLG028_Unstim_Control_2.fcs
inst/extdata/Gates_PTLG034_Unstim_Control_1.fcs
inst/extdata/Gates_PTLG034_Unstim_Control_2.fcs
man/CytoNorm.normalize.Rd
man/CytoNorm.train.Rd
man/PlotOverviewCV.Rd
man/QuantileNorm.normalize.Rd
man/QuantileNorm.train.Rd
man/cytofTransform.Rd
man/cytofTransform.reverse.Rd
man/emdEvaluation.Rd
man/figures/algorithm_overview.PNG
man/getCytoNormQuantiles.Rd
man/getDensities.Rd
man/getQuantiles.Rd
man/identityFunction.Rd
man/madEvaluation.Rd
man/named.list.Rd
man/plotDensities.Rd
man/plotSplines.Rd
man/prepareFlowSOM.Rd
man/testCV.Rd
man/textPlot.Rd
vignettes/.gitignore
vignettes/CytoNorm_channels_without_clustering.Rmd
vignettes/CytoNorm_channels_without_clustering.md
vignettes/CytoNorm_channels_without_clustering_files/figure-gfm/EMD and MAD figures-1.png
vignettes/CytoNorm_channels_without_clustering_files/figure-gfm/Evaluate densities-1.png
vignettes/CytoNorm_channels_without_clustering_files/figure-gfm/Evaluate splines-1.png
vignettes/CytoNorm_channels_without_clustering_files/figure-gfm/Evaluate splines-2.png
vignettes/CytoNorm_towards_distribution.Rmd
vignettes/CytoNorm_towards_distribution.md
vignettes/CytoNorm_towards_distribution_files/figure-gfm/EMD and MAD figures-1.png
vignettes/CytoNorm_towards_distribution_files/figure-gfm/Evaluate densities-1.png
vignettes/CytoNorm_towards_distribution_files/figure-gfm/Evaluate splines-1.png
vignettes/CytoNorm_towards_distribution_files/figure-gfm/Evaluate splines-2.png
vignettes/CytoNorm_without_controls.Rmd
vignettes/CytoNorm_without_controls.md
vignettes/CytoNorm_without_controls_files/figure-gfm/EMD and MAD figures-1.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate CVs-1.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate CVs-2.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate CVs-3.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate densities-1.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate splines-1.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate splines-2.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate splines-3.png
vignettes/CytoNorm_without_controls_files/figure-gfm/Evaluate splines-4.png
