query_multiple: query_multiple

In saeyslab/FlowSOM_workshop: How to get started with FlowSOM

Description

Function which takes a named list of multiple cell types, where every item is a named vector with values "high"/"low" and the names correspond to the markers or channels (e.g. as generated by parse_markertable).

Usage

query_multiple(fsom, ff, cell_types, pdf_name, ...)

Arguments

fsom	FlowSOM object
ff	FlowFrame used as reference for channel and marker names
cell_types	Description of the cell types. Named list, with one named vector per cell type containing "high"/"low" values
pdf_name	Path to a pdf file to save figures

Value

A label for every FlowSOM cluster (Unknown or one of the celltype names of the list, if selected by QueryStarPlot)

saeyslab/FlowSOM_workshop documentation built on Sept. 3, 2021, 9:21 a.m.