alias_to_symbol_SCE: Convert aliases to official gene symbols in a...

In saeyslab/multinichenetr: MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Convert aliases to official gene symbols in a SingleCellExperiment Object

Description

alias_to_symbol_SCEConvert aliases to official gene symbols in a SingleCellExperiment Object. Makes use of 'nichenetr::convert_alias_to_symbols'

Usage

alias_to_symbol_SCE(sce, organism)

Arguments

sce	SingleCellExperiment object of the scRNAseq data of interest. Contains both sender and receiver cell types.
organism	Is sce data from "mouse" or "human"

Value

SingleCellExperiment Object

Examples

## Not run: 
sce = sce %>% alias_to_symbol_SCE("human")

## End(Not run)

saeyslab/multinichenetr documentation built on Jan. 15, 2025, 7:55 p.m.