get_FDR_empirical_plots: Get diagnostic plots of the empirical null.

In saeyslab/multinichenetr: MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Get diagnostic plots of the empirical null.

Description

get_FDR_empirical_plots Get diagnostic plots of the empirical null.. This is the function that works under the hood of 'get_FDR_empirical_plots_all'. Credits to Jeroen Gillis (cf satuRn package)

Usage

get_FDR_empirical_plots(de_output_tidy, cluster_id_oi, contrast_oi)

Arguments

de_output_tidy	Data frame of DE results, containing at least the following columns: cluster_id, contrast, p_val, logFC.
cluster_id_oi	Indicate which celltype DE results should be filtered for.
contrast_oi	Indicate which contrast DE results should be filtered for.

Value

plot object

saeyslab/multinichenetr documentation built on Jan. 15, 2025, 7:55 p.m.