Man pages for saeyslab/triwise
Gene expression changes in three biological conditions
| estimateRedundancy | Estimates the redundancy of enriched gene sets |
| generateBackgroundModel | Generate background models |
| getTransformationMatrix | Barycentric transformation matrix |
| interactiveDotplot | Interactive triwise dotplot |
| interactivePvalplot | Interactive plot of p-values |
| plotDotplot | Creating a dotplot |
| plotPvalplot | Plot results from unidirectional enrichment |
| plotRoseplot | Plot the directional distribution of genes |
| testEnrichment | Simple fisher's exact test for enrichment in a given set of... |
| testLocality | Test local upregulation |
| testRayleigh | Rayleigh z-test implementation |
| testUnidirectionality | Test gene sets for unidirectional enrichment |
| transformBarycentric | Conversion to barycentric coordinates |
| transformReverseBarycentric | Convert from barycentric coordinates back to original... |
| vandelaar | Expression dataset from van de Laar et al. 2016 |
