Files in saezlab/mistyR
Multiview Intercellular SpaTial modeling framework
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
NEWS.md
R/data.R
R/misty.R
R/model-functions.R
R/model.R
R/plots.R
R/utils.R
R/view-composers.R
R/view-manipulators.R
README.md
codecov.yml
data/synthetic.rda
inst/CITATION
man/add_juxtaview.Rd
man/add_paraview.Rd
man/add_views.Rd
man/clear_cache.Rd
man/collect_results.Rd
man/create_initial_view.Rd
man/create_view.Rd
man/extract_signature.Rd
man/filter_views.Rd
man/plot_contrast_heatmap.Rd
man/plot_contrast_results.Rd
man/plot_improvement_stats.Rd
man/plot_interaction_communities.Rd
man/plot_interaction_heatmap.Rd
man/plot_view_contributions.Rd
man/reexports.Rd
man/remove_views.Rd
man/rename_view.Rd
man/run_misty.Rd
man/select_markers.Rd
man/synthetic.Rd
pkgdown/_pkgdown.yml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/helper.R
tests/testthat/test-misty.R
tests/testthat/test-plots.R
tests/testthat/test-utils.R
tests/testthat/test-view-composers.R
tests/testthat/test-view-manipulators.R
vignettes/FunctionalAndStructuralPipeline.Rmd
vignettes/FunctionalPipelinePathwayActivityLigands.Rmd
vignettes/FunctionalPipelinePathwaySpecific.Rmd
vignettes/MistyRStructuralAnalysisPipelineC2L.Rmd
vignettes/MistyRStructuralAnalysisPipelineDOT.Rmd
vignettes/ReproduceSignaturePaper.Rmd
vignettes/mistyDataFormats.Rmd
vignettes/mistyR.Rmd
vignettes/sm.svg
