NEWS.md

In saezlab/progeny: Pathway RespOnsive GENes for activity inference from gene expression

Progeny v1.11.3 (Release date: 2020-10-14)

• Model matrices are not accessed in the local and not in the global enviroment

Progeny v1.11.2 (Release date: 2020-09-01)

• Fixed issue with rownames when using Progeny with Permutations function

Progeny v1.11.1 (Release date: 2020-06-09)

• Website: Google Analytics

Progeny v1.9.7 (Release date: 2020-04-27)

• PROGENy website development

Progeny v1.9.6 (Release date: 2020-04-27)

Major update with the following main points:

• Added the mouse model matrix containing 14 pathways

• The human model matrix extended to 14 pathways

• Added the following functions: progenyPerm, progenyScatter, progenySavePlots, getModel

• Added tests and test data

• Added the vignette for usage the PROGENy on single-cell RNA-seq data

• Added functionality to work with Seurat objects

saezlab/progeny documentation built on Feb. 9, 2023, 2:21 p.m.