gene_deviations: Compute deviations of gene expression for reference levels.
In sales-lab/omicsdata: Support package for the "Omics Data" course
gene_deviations R Documentation
Compute deviations of gene expression for reference levels.
Description
Compute deviations of gene expression for reference levels.
Usage
gene_deviations(expr, reference_levels)
Arguments
expr
The expression matrix.
reference_levels
A vector with a reference level for each gene.
Value
A table of deviations, with columns sample and
deviation.
Examples
library(airway)
data(airway)
counts <- assays(airway)$counts
m <- gene_medians(counts)
gene_deviations(counts, m)
sales-lab/omicsdata documentation built on April 15, 2024, 11:33 p.m.
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| gene_deviations | R Documentation |
Compute deviations of gene expression for reference levels.
Description
Compute deviations of gene expression for reference levels.
Usage
gene_deviations(expr, reference_levels)
Arguments
expr |
The expression matrix. |
reference_levels |
A vector with a reference level for each gene. |
Value
A table of deviations, with columns sample and
deviation.
Examples
library(airway)
data(airway)
counts <- assays(airway)$counts
m <- gene_medians(counts)
gene_deviations(counts, m)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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