most_variable_profiles: Select the most abundant profiles from an expression matrix.
In sales-lab/omicsdata: Support package for the "Omics Data" course
most_variable_profiles R Documentation
Select the most abundant profiles from an expression matrix.
Description
Select the most abundant profiles from an expression matrix.
Usage
most_variable_profiles(expression, n = 100L, cut_mean = 100)
Arguments
expression
The expression matrix.
n
The number of profiles to select.
cut_mean
If the mean expression in a profile is lower than this value,
ignore the entire profile.
Value
A selection of rows from the input matrix.
Examples
library(airway)
data(airway)
most_variable_profiles(assays(airway)$counts)
sales-lab/omicsdata documentation built on April 15, 2024, 11:33 p.m.
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| most_variable_profiles | R Documentation |
Select the most abundant profiles from an expression matrix.
Description
Select the most abundant profiles from an expression matrix.
Usage
most_variable_profiles(expression, n = 100L, cut_mean = 100)
Arguments
expression |
The expression matrix. |
n |
The number of profiles to select. |
cut_mean |
If the mean expression in a profile is lower than this value, ignore the entire profile. |
Value
A selection of rows from the input matrix.
Examples
library(airway)
data(airway)
most_variable_profiles(assays(airway)$counts)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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