GetIndices_WholeMatrix: Search lines which respects request on one or more...

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Search lines which respects request on one or more conditions.

Description

This function looks for the lines that respect the request in either all conditions or at least one condition.

Usage

GetIndices_WholeMatrix(metacell.mask, op = "==", percent = FALSE, th = 0)

Arguments

metacell.mask	xxx
op	String for operator to use. List of operators is available with SymFilteringOperators().
percent	A boolean to indicate whether the threshold represent an absolute value (percent = FALSE) or a percentage (percent=TRUE).
th	A floating number which is in the interval [0, 1]

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept[1:10]
level <- obj@experimentData@other$typeOfData
pattern <- 'missing'
metacell.mask <- match.metacell(metadata=GetMetacell(obj), pattern=pattern, level=level)
percent <- FALSE
th <- 3
op <- '>='
ind <- GetIndices_WholeMatrix(metacell.mask, op, percent, th)

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.