Metacell_proline: Sets the metacell dataframe

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Sets the metacell dataframe

Description

In the quantitative columns, a missing value is identified by no value rather than a value equal to 0. Conversion rules Initial conversion rules for maxquant |————–|—————–|—–| | Quanti | PSM count | Tag | |————–|—————–|—–| | == 0 | N.A. | whatever | 2.0 | | > 0 | > 0 | 1.1 | | > 0 | == 0 | 1.2 | | > 0 | unknown col | 1.0 | |————–|—————–|—–|

Usage

Metacell_proline(qdata, conds, df, level = NULL)

Arguments

qdata	An object of class MSnSet
conds	xxx
df	A list of integer xxxxxxx
level	xxx

Value

xxxxx

Author(s)

Samuel Wieczorek

Examples

## Not run:  
file <- system.file("extdata", "Exp1_R25_pept.txt", package="DAPARdata")
data <- read.table(file, header=TRUE, sep="\t",stringsAsFactors = FALSE)
metadataFile <- system.file("extdata", "samples_Exp1_R25.txt", 
package="DAPARdata")
metadata <- read.table(metadataFile, header=TRUE, sep="\t", as.is=TRUE, 
stringsAsFactors = FALSE)
conds <- metadata$Condition
qdata <- data[1:100,56:61]
df <- data[1:100 , 43:48]
df <- Metacell_proline(qdata, conds, df, level = 'peptide')

## End(Not run)

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.