SetCC: Returns the connected components

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Returns the connected components

Description

Returns the connected components

Usage

SetCC(obj, cc)

Arguments

obj	An object (peptides) of class MSnSet.
cc	The connected components list

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
Xshared <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein_group_IDs", FALSE)
Xunique <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein_group_IDs", TRUE)
ll.X <- list(matWithSharedPeptides = Xshared, matWithUniquePeptides = Xunique)
Exp1_R25_pept <- SetMatAdj(Exp1_R25_pept, ll.X)
ll1 <- get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithSharedPeptides)
ll2 <- DAPAR::get.pep.prot.cc(GetMatAdj(Exp1_R25_pept)$matWithUniquePeptides)
cc <- list(allPep = ll1, onlyUniquePep = ll2)
Exp1_R25_pept <- SetCC(Exp1_R25_pept, cc)

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.