SumByColumns: Normalisation SumByColumns

View source: R/normalize.R

SumByColumnsR Documentation

Normalisation SumByColumns

Description

Normalisation SumByColumns

Usage

SumByColumns(qData, conds = NULL, type = NULL, subset.norm = NULL)

Arguments

qData

xxxx

conds

xxx

type

Available values are "overall" (shift all the sample distributions at once) or "within conditions" (shift the sample distributions within each condition at a time).

subset.norm

A vector of index indicating rows to be used for normalization

Value

A normalized numeric matrix

Author(s)

Samuel Wieczorek, Thomas Burger, Helene Borges, Anais Courtier, Enora Fremy

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
qData <- Biobase::exprs(Exp1_R25_pept)
conds <- Biobase::pData(Exp1_R25_pept)$Condition
normalized <- SumByColumns(qData, conds, type="within conditions", 
subset.norm=1:10)


samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.