getIndicesOfLinesToRemove: Get the indices of the lines to delete, based on a prefix...

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Get the indices of the lines to delete, based on a prefix string

Description

This function returns the indice of the lines to delete, based on a prefix string

Usage

getIndicesOfLinesToRemove(obj, idLine2Delete = NULL, prefix = NULL)

Arguments

obj	An object of class MSnSet.
idLine2Delete	The name of the column that correspond to the data to filter
prefix	A character string that is the prefix to find in the data

Value

A vector of integers.

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
ind <- getIndicesOfLinesToRemove(Exp1_R25_pept[1:100], "Potential_contaminant", 
prefix="+")

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.