histPValue_HC: Plots a histogram ov p-values

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Plots a histogram ov p-values

Description

This function plots a histogram ov p-values

Usage

histPValue_HC(pval_ll, bins = 80, pi0 = 1)

Arguments

pval_ll	xxx
bins	xxx
pi0	xxx

Value

A plot

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_prot, package='DAPARdata')
obj <- Exp1_R25_prot[1:1000]
level <- obj@experimentData@other$typeOfData
metacell.mask <- match.metacell(GetMetacell(obj), 'missing', level)
indices <- GetIndices_WholeMatrix(metacell.mask, op='>=', th=1)
obj <- MetaCellFiltering(obj, indices, cmd='delete')
qData <- Biobase::exprs(obj$new)
sTab <- Biobase::pData(obj$new)
allComp <- limmaCompleteTest(qData,sTab)
histPValue_HC(allComp$P_Value[1])

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.