wrapper.compareNormalizationD_HC: Builds a plot from a dataframe

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Builds a plot from a dataframe

Description

Wrapper to the function that plot to compare the quantitative proteomics data before and after normalization.

Usage

wrapper.compareNormalizationD_HC(
  objBefore,
  objAfter,
  condsForLegend = NULL,
  ...
)

Arguments

objBefore	A dataframe that contains quantitative data before normalization.
objAfter	A dataframe that contains quantitative data after normalization.
condsForLegend	A vector of the conditions (one condition per sample).
...	arguments for palette

Value

A plot

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept
conds <- Biobase::pData(obj)[,"Condition"]
objAfter <- wrapper.normalizeD(obj = obj, method = "QuantileCentering",  
conds=conds, type = "within conditions")
wrapper.compareNormalizationD_HC(obj, objAfter, conds)

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.