printGSS: a function for gss analysis description

In sanchezi/openSilexStatR: Lattice Experiments Data Analysis

Description

a function for gss analysis description

Usage

printGSS(object, threshold)

Arguments

object	a dataframe to describe from fitGSS() function
threshold	numeric, a threshold for Kullback-Leibler projection

Details

the input object is a fitGSS result and printGSS() prints the 2nd element of it (a dataframe with the Kullback-Leibler projection). The colnames of this dataframe are Genosce, ratio, kl, check. The outlier curves are identified with the Kullback-Lleiber distance higher than a given threshold, see (Gu, 2014). Final identification of outlier is done by an operator over genotypes when the test is significant.

Value

a description

See Also

ssanova

Examples

data(plant1)
selec<-c("Lo1199_H","Lo1124_H","Lo1038_H","A3_H")
mydata<-plant1[plant1[,"genotypeAlias"] %in% selec,]
fm1<-fitGSS(datain=mydata,trait="biovolume",loopId="genotypeAlias")
 printGSS(object=fm1,threshold=0.05)

sanchezi/openSilexStatR documentation built on Sept. 10, 2020, 1:03 p.m.