openSilexStatR: Lattice Experiments Data Analysis

#' Visible leafs of plant over thermal time in an experiment
#'
#' A dataset containing the number of leafs over thermal time for each plant
#' of an experiment
#' @format a data frame with XX rows and 10 variables:
#' \describe{
#'   \item{experimentAlias}{Id of an experiment}
#'   \item{F_visible}{Number of leafs}
#'   \item{DAS}{DAS}
#'   \item{Line}{Line position in the greenhouse}
#'   \item{Position}{Position in the line in the greenhouse}
#'   \item{scenario}{Scenarios of the experiment}
#'   \item{genotypeAlias}{Genotypes used in the experiment}
#'   \item{Genetic}{Genetic}
#'   \item{thermalTime}{Thermal Time}
#'   \item{Ref}{Reference of each plant in the greenhouse}
#' }
"plant2"

#' Parameters of interest of plant over thermal time in an experiment
#'
#' A dataset containing biovolume, plant height (PH) and leaf area (LA) over thermal time
#' for each plant of an experiment
#' @format a data frame with XX rows and 14 variables:
#' \describe{
#'   \item{experimentAlias}{Id of an experiment}
#'   \item{Day}{date}
#'   \item{potAlias}{Id of the pot in the greenhouse}
#'   \item{scenario}{Scenarios of the experiment}
#'   \item{genotypeAlias}{Genotypes used in the experiment}
#'   \item{repetition}{Repetition}
#'   \item{Line}{Line position in the greenhouse}
#'   \item{Position}{Position in the line in the greenhouse}
#'   \item{thermalTime}{Thermal Time}
#'   \item{plantHeight}{plant height (mm)}
#'   \item{leafArea}{Leaf area}
#'   \item{biovolume}{biovolume (g)}
#'   \item{Repsce}{repetion-scenario}
#'   \item{Ref}{Reference of each plant in the greenhouse}
#' }
"plant1"

#' Parameters of interest of plants over thermal time in an experiment
#'
#' A dataset containing biovolume, plant height (PH) and leaf area (LA) over thermal time
#' for each plant of an experiment
#' @format a data frame with XX rows and 15 variables:
#' \describe{
#'   \item{Ref}{Reference of each plant in the greenhouse}
#'   \item{experimentAlias}{Id of an experiment}
#'   \item{Day}{date}
#'   \item{potAlias}{Id of the pot in the greenhouse}
#'   \item{scenario}{Scenarios of the experiment}
#'   \item{genotypeAlias}{Genotypes used in the experiment}
#'   \item{repetition}{Repetition}
#'   \item{Line}{Line position in the greenhouse}
#'   \item{Position}{Position in the line in the greenhouse}
#'   \item{thermalTime}{Thermal Time}
#'   \item{plantHeight}{plant height (mm)}
#'   \item{leafArea}{Leaf area}
#'   \item{biovolume}{biovolume (g)}
#'   \item{Repsce}{repetion-scenario}
#' }
"plant3"

#' Parameters of interest of plants in an experiment for outlier detection purpose
#'
#' A dataset containing biovolume (biovolume24), plant height (PH24) and phyllocron (phy)
#' for each plant of an experiment for outlier detection purpose
#' @format a data frame with 1680 rows and 11 variables:
#' \describe{
#'   \item{Line}{Line position in the greenhouse}
#'   \item{Position}{Position in the line in the greenhouse}
#'   \item{Ref}{Reference of each plant in the greenhouse}
#'   \item{potAlias}{Id of the pot in the greenhouse}
#'   \item{scenario}{Scenarios of the experiment}
#'   \item{genotypeAlias}{Genotypes used in the experiment}
#'   \item{repetition}{Repetition}
#'   \item{Repsce}{repetion-scenario}
#'   \item{Biomass24}{biomass at 24 TT day (g)}
#'   \item{PH24}{plant height at 24 TT day (mm)}
#'   \item{Phy}{Phyllocron}
#' }
"plant4"

#' Parameters of interest of plant over thermal time in an experiment
#'
#' A dataset containing biomass, plant height and leaf area over thermal time
#' for each plant of an experiment
#' @format a data frame with 55799 rows and 13 variables:
#' \describe{
#'   \item{Time}{date of measurement}
#'   \item{plantId}{Id of the plant in the greenhouse}
#'   \item{Genotype}{Genotypes used in the experiment}
#'   \item{Treatment}{Scenario of the experiment}
#'   \item{Population}{panel name}
#'   \item{Row}{Line position in the greenhouse}
#'   \item{Col}{Position in the line in the greenhouse}
#'   \item{Biomass_Estimated}{Estimation of the biomass from the pictures}
#'   \item{LA_Estimated}{Estimation of the leaf area from the pictures}
#'   \item{Height_Estimated}{Estimation of the height from the pictures}
#'   \item{count_leaf}{Number of visible leaves}
#'   \item{phyllocron}{The phyllocron is calculated as the slope of the linear regression 
#'   between the number of leaves and the thermal time at 2017-04-27 day, before the
#'   beginning of the water deficit}
#'   \item{TT}{thermal time}
#' }
"PAdata"

#' leaf temperature in degree celsius over time in a greenhouse experiment
#'
#' A dataset containing the leaf temperature (degree celsius) over time 
#' during an experiment to calculate themal time
#' @format a data frame with 7393 rows and 4 variables:
#' \describe{
#'   \item{date}{date of measurement}
#'   \item{yyyymmdd}{day of measurement}
#'   \item{codeVariable}{code of the variable in the web service}
#'   \item{value}{leaf temperature in degree celsius}
#' }
"meteoDT"