sandraTL/PathQuant: Annotation of gene-metabolite pairs using topology of KEGG metabolic pathway maps

Modeling of KEGG metabolism pathway maps into compound graph format to compute shortest reactional distance (srd) for gene-metabolite pairs to assess their biological relevance and output results in data.frame and graphical outputs.

Getting started

Package details

AuthorSandra Therrien-Laperriere <sandra.therrien.laperriere@gmail.com> Sarah Cherkaoui <cherkaos@gmail.com>
MaintainerSandra Therrien-Laperriere <sandra.therrien.laperriere@gmail.com>
LicenseGNU-3
Version0.1.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("sandraTL/PathQuant")
sandraTL/PathQuant documentation built on May 29, 2019, 1:45 p.m.