state: Constructor for state class

In sangeetabhatia03/multipatchr: Discrete Time Multi-Patch SEIR Model

Description

Build a state, which is a collection of patches where each patch has SEIR compartments and patch-specific birth and death rates.

Usage

state(s_patches, e_patches, i_patches, r_patches, birth_rates, death_rates,
  transmission_rates, infection_rates, recovery_rates, movement_rate)

Arguments

s_patches	Vector of number of susceptibles in each patch,
e_patches	Vector of number of exposed in each patch
i_patches	Vector of number of infected in each patch
r_patches	Vector of number of recovered in each patch
birth_rates	patch-specific birth rates
death_rates	patch-specific death rates
transmission_rates	Vector of patch-specific transmission rate
infection_rates	Vector of patch-specific infection rate
recovery_rates	Vector of patch-specific recovery rate
movement_rate	M rate of movement between patches is defined the rate matrix M where m[i, j] is the rate of movement from i to j conditional on moving out of i per unit time. Must be n X n matrix where is the number of patches i.e, max of lengths of all input vectors s_patches, e_patches, i_patches, r_patches, birth_rates, and death_rates.

Value

List with class 'state'. Each element of 'state' is a list of class 'patch'. In addition, 'state' contains a 'movement_rate' which is a non-negative matrix of rates of movement between patches.

Author(s)

Sangeeta Bhatia

See Also

[patch()]

sangeetabhatia03/multipatchr documentation built on Jan. 29, 2020, 5:42 p.m.