PatternCount: PatternCount

In sanjaysinghrathi/PatternCount: PatternCount is a package to count the number of times a 'Pattern' occurs in a 'Text'.

Description

PatternCount is a package to count the number of times a 'Pattern' occurs in a 'Text'. It is developed for use in genomics to identify the number of times a k-mer ('Pattern') appears in a length of DNA sequence ('Text')

Usage

PatternCount(Text, Pattern)

Arguments

Text	A character vector containing one string
Pattern	A character vector containing one small string. Its length should be shorter than text

Examples

text <- c("ACGTGTACGTGT")
pattern <- c("GTGT")

PatternCount(Text=text,Pattern=pattern)

sanjaysinghrathi/PatternCount documentation built on July 12, 2020, 12:07 a.m.