Man pages for santiago1234/phdpopgene
What the Package Does (One Line, Title Case)
| add_rsids_to_funseq | Add rs ID to INFO annotation |
| aggregate_multiple_consequence_variants | Process variants with multiple consequences |
| consequence_summary | Summarize the Consequence |
| count_alt_alleles | Counts the number of alternative alleles |
| funq_load_summary | How many variants with (FUNSEQ > cut_off_val) do each... |
| funseq_load | Counts the number of alternative alleles |
| genetic_load_FUNSEQ_and_Consequence_summary | Computes FUNSEQ load and Consequence summary. |
| get_CSQ | Extract Calculated variant consequence |
| get_FUNSEQ | Extract FUNSEQ score from vcf annotation info |
| get_genotype | Extract genotypes from VCF in a tidy frame |
| get_var_annotation | Extract variant annotation |
| gl_funseq_consequence_summary | TODO |
| merge_genotypes_with_annotation | Merge genotypes with annotation |
| pipe | Pipe operator |
| test_anno_vcf | Variant annotation |
| test_vcf | A subset of vcf file for chromosome 22 (1000 genomes) |
| variant_consequences | Ensembl Variation - Calculated variant consequences |
