genetic_load_FUNSEQ_and_Consequence_summary: Computes FUNSEQ load and Consequence summary.
In santiago1234/phdpopgene: What the Package Does (One Line, Title Case)

The funseq load for an individual is defined as: TODO

genetic_load_FUNSEQ_and_Consequence_summary(
  vcf_genotypes,
  vcf_annotation,
  chr,
  cores = 6,
  cut_off_val = 1.5
)

`vcf_genotypes`	CollapsedVCF, genotypes vcf
`vcf_annotation`	CollapsedVCF -> `VariantAnnotation::readVcf`. The annotaion for the variants in `vcf_genotypes`
`cores`	int, the number of cores used for parallel computation. The computation is parallelized over the individuals (samples).

NOTE: If an individual has non variant sites (i. e. 0|0) it wont be present in the results table.

A list with two elements: FS_l (funseq load) and CSQ_s

santiago1234/phdpopgene documentation built on Dec. 31, 2020, 5:06 a.m.

santiago1234/phdpopgene index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description