funq_load_summary: How many variants with (FUNSEQ > cut_off_val) do each...
In santiago1234/phdpopgene: What the Package Does (One Line, Title Case)

Description Usage Arguments Details Value

View source: R/utlis-genetic-load.R

For each individual computes how many variants with FUNSEQ > cut_off_val carries.

1	funq_load_summary(geno_anno_mlong, cut_off_val)

geno_anno_mlong

Tibble with genotypes and annotation, the output of merge_genotypes_with_annotation

If the individual is 0|0 we add nothing to funseq_load If the individual is 1|0 or 0|1 we add 1 to funseq_load If the individual is 1|1 or 0|1 we add 2 to funseq_load

A data frame, with the following columns

individual: individual id, example: HG00551
funseq_load: How many variants have a funseqscore > cut_off_val

santiago1234/phdpopgene documentation built on Dec. 31, 2020, 5:06 a.m.

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