circular.time.slice: mcc2

In santiagosnchez/rBt: r BEAST tools (rBt)

Description

Adds a circular time slice to a ploted phylo tree of type = "fan"

Usage

circular.time.slice(phy, start, end, col = "grey")

Arguments

phy	phylo tre object
start	start of the time slice (lower)
end	end of the time slice (upper)
col	choose color (default = "grey")

See Also

plot.phylo sp

Examples

path <- system.file("data/mcc.tre", package="rBt")
tr <- read.beast.annot(path)
timerange <- range(branching.times(tr))
# equally spaced time slices
timeslices <- seq(timerange[1], timerange[2], length.out=5)
ts <- cbind(timeslices[-5], timeslices[-5]+((timeslices[3]-timeslices[2])/2))
# plot tree
plot(tr, type="fan", show.tip.label=F)
# add slice
for (i in 1:dim(ts)[1])
   circular.time.slice(tr, ts[i,1], ts[i,2])

santiagosnchez/rBt documentation built on Aug. 9, 2021, 11:52 p.m.