mcc2: mcc2

In santiagosnchez/rBt: r BEAST tools (rBt)

Description

This function is based on the maxCladeCred in phangorn, and it finds the maximum clade crebility tree given a list of trees.

Usage

mcc2(phy, annot = "pos")

Arguments

phy	List of multiPhylo trees
annot	Inform whether mcc2 should annotate on the mcc tree using "freq" frequencies or "pos" posterior probabilities.

Value

mcc tree phylo object

See Also

maxCladeCred prop.part

Examples

path <- system.file("data/trees/", package="rBt")
trs <- mcc.trees2multi(path)
mcctr <- mcc2(trs)

santiagosnchez/rBt documentation built on Aug. 9, 2021, 11:52 p.m.