CpGs_in_MEAT: Description of the CpGs used in MEAT

Description Usage Format Source

Description

Detailed information on the 200 CpGs automatically selected by the elastic net model.

Usage

1

Format

A data frame with 201 rows and 6 variables:

CpG

CpG name

Coefficient

Weight given by the elastic net model to the CpG

Chromosome

Chromosome where the CpG is located

Position

Position in bp where the CpG is located (human genome build version hg38)

Gene

Gene annotated to the CpG. Each CpG was annotated to one or more genes using the annotation file from Zhou et al. to which we added annotation to long-range interaction promoters using chromatin states in male skeletal muscle from the Roadmap Epigenomics Project and GeneHancer information from the Genome Browser (hg38).

Chromatin_state_male_SM

Chromatin state in male skeletal muscle from the the Roadmap Epigenomics Project)

Source

https://onlinelibrary.wiley.com/doi/full/10.1002/jcsm.12556


sarah-voisin/MEAT documentation built on Aug. 15, 2021, 3:28 p.m.