Evaluation of Indicator Performances for Assessing Ecosystem States

all_results_ex | Output tibble after applying all IND~pressure modeling... |

approx_deriv | Alternative method for confidence interval approximations of... |

calc_deriv | Calculate the derivatives of the IND response functions and... |

calc_nrmse | Calculates the Normalized Root Mean Square Error (NRMSE) as... |

calc_pred | Calculate predicted values and their confidence intervals for... |

check_ind_press | Check class and variable types of ind and press data |

check_input_tbl | Check class, existing variables and data types of input... |

check_input_vec | Check class and data type of input vector |

clust_sc | Score-based cluster analysis |

compare_thresholds | Compare changes in t_var based on different threshold levels. |

cond_boot | Conditional bootstraps |

cooks_dist_gamm | Calculates the Cook's distance for Generalized Additive Mixed... |

crit_scores_tmpl | Template of (sub-)criteria and corresponding scoring... |

dist_sc | Score-based distance matrix |

expect_resp | Score adjustments for sub-criterion 10.1 |

find_id | Extracts the IND~pressure IDs in the tibble. |

get_signif_code | Create a code indicating the significance of values given by... |

get_sum_output | Extract specific outputs from the GAM(M) summary |

ind_ex | Food web indicators of the Central Baltic Sea (Bornholm... |

ind_init | Initialization of indicator-pressure models |

ind_init_ex | Output tibble from the 'ind_init' function |

INDperform-package | INDperform: Performance validation of ecological state... |

is_value | Returns a logical vector whether input |

loocv_thresh_gam | Leave-One-Out Cross-Validation (LOOCV) procedure for... |

merge_models | Merging two model output tibbles. |

merge_models_ex | Output tibble from the 'merge_models' function |

model_gam | Modeling of indicator responses to single pressures with GAMs |

model_gam_ex | Model output tibble from the 'model_gam' function |

model_gamm | Modeling of indicator responses to single pressures with... |

model_gamm_ex | Model output tibble from the 'model_gamm' function |

model_trend | Modeling of indicator trends |

model_trend_ex | Model output tibble from the 'model_trend' function |

pipe | Pipe operator |

place_text | Place annotations to a specified position |

plot_clust_sc | Dendrogram of the cluster analysis. |

plot_diagnostics | Diagnostic plots for a fitted GAM, GAMM or threshold-GAM(M) |

plot_model | Visualization of all IND~pressure-model results relevant for... |

plot_outline | Helper functions for plot_model |

plot_spie | Helper function for plot_spiechart |

plot_spiechart | Create score-based spie chart |

plot_statespace_ch | Convex hull plot |

plot_statespace_ed | Time series plot of Euclidean distance |

plot_thresh | Helper functions for plot_model |

plot_trend | Create indicator trend plot |

press_ex | Environmental variables representing pressures for pelagic... |

press_type_ex | Pressure variables and their associated pressure types from... |

scoring | Scoring of indicator performance |

select_interaction | Create tibble of all potential pressure combinations to test... |

select_model | Select the best correlation structure in the GAMM |

sort_output_tbl | Rearrange columns in output tibble from IND~pressure modeling... |

statespace_ch | Convex hull in 2-dimensional space |

statespace_ed | Euclidean distance in state space |

summary_sc | Summary of indicator performance scores |

test_interaction | Test for interactions between 2 pressure variables |

test_tac | Compute (partial) autocorrelation functions and test for... |

thresh_gam | Fits a GAM with a threshold-formulation |

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