MgsaMcmcResults-class: Instances of this class are used to hold the additional...
In sba1/mgsa-bioc: Model-based gene set analysis
Description
Instances of this class are used to hold the additional information
that was provided by running (possibly multiple times) an MCMC algorithm.
Slots
nsampleshow many samples collected per MCMC run
stepshow many steps per MCMC run
restartshow many MCMC runs
alphaMcmcPostposterior estimates for each MCMC run of the parameter alpha
betaMcmcPostposterior estimates for each MCMC run of the parameter beta
pMcmcPostposterior estimates for each MCMC run of the parameter p
setsMcmcPostposterior estimates for each MCMC run of the sets marginal posterior probabilities
The columns of the matrices alphaMcmcPost, betaMcmcPost, pMcmcPost and setsMcmcPost stores the posterior estimates for each individual MCMC run.
The row order matches the one of the slot alphaPost, betaPost, pPots, and setsResults respectively.
Accessor methods exist for each slot.
See Also
sba1/mgsa-bioc documentation built on May 20, 2021, 7:43 p.m.
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Description
Instances of this class are used to hold the additional information that was provided by running (possibly multiple times) an MCMC algorithm.
Slots
nsampleshow many samples collected per MCMC run
stepshow many steps per MCMC run
restartshow many MCMC runs
alphaMcmcPostposterior estimates for each MCMC run of the parameter alpha
betaMcmcPostposterior estimates for each MCMC run of the parameter beta
pMcmcPostposterior estimates for each MCMC run of the parameter p
setsMcmcPostposterior estimates for each MCMC run of the sets marginal posterior probabilities
The columns of the matrices
alphaMcmcPost,betaMcmcPost,pMcmcPostand setsMcmcPost stores the posterior estimates for each individual MCMC run. The row order matches the one of the slotalphaPost,betaPost,pPots, andsetsResultsrespectively.Accessor methods exist for each slot.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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