paternity: Paternity by Exclusion Test
In sbeazley/Paternity-Functions: Paternity per exclusion in autotetraploids
Description
Usage
Arguments
Value
Examples
Description
Performs paternity by exclusion based on a matrix three entries (trio: mom, individual, dad), returns the proportion of mismatch cases.
Usage
1
paternity(x)
Arguments
x
matrix of values to test. The matrix should be 3 columns with the progeny being tested in the second column.
Value
A vector with proportion of cases that has a mismatch a.k.a. pedigree conflict.
Examples
1
2
3
4
5
data(potato.data)
trio1 = potato.data[,c("W6511.1R", "W15268.5R", "VillettaRose")]
trio2 = potato.data[,c("W6511.1R", "W15268.5R", "W9914.1R")]
paternity(trio1) #more likely to be this trio
paternity(trio2)
sbeazley/Paternity-Functions documentation built on Dec. 22, 2021, 10:18 p.m.
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Description Usage Arguments Value Examples
Description
Performs paternity by exclusion based on a matrix three entries (trio: mom, individual, dad), returns the proportion of mismatch cases.
Usage
1 | paternity(x)
|
Arguments
x |
matrix of values to test. The matrix should be 3 columns with the progeny being tested in the second column. |
Value
A vector with proportion of cases that has a mismatch a.k.a. pedigree conflict.
Examples
1 2 3 4 5 | data(potato.data)
trio1 = potato.data[,c("W6511.1R", "W15268.5R", "VillettaRose")]
trio2 = potato.data[,c("W6511.1R", "W15268.5R", "W9914.1R")]
paternity(trio1) #more likely to be this trio
paternity(trio2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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