Man pages for sbg/sevenbridges-r
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
| addIdNum | add '#' prefix to id |
| api | Core HTTP logic for Seven Bridges API |
| App-class | Class App |
| as-methods | Convert a object slots/fields to a list, json, or yaml file |
| Auth-class | Class Auth |
| batch | batch function for task batch execution |
| Binding | Binding |
| CCBList | characterORCommandLineBindingList Class |
| cli_list_projects | List projects using Seven Bridges command line uploader |
| cli_list_tags | List all the tags in project using Seven Bridges command line... |
| cli_upload | Upload files using Seven Bridges command line uploader |
| CommandInputParameter-class | CommandInputParameter Class |
| CommandInputSchema-class | CommandInputSchema Class |
| CommandLineBinding-class | CommandLineBinding Class |
| CommandLineTool | CommandLineTool Class |
| CommandOutputBinding-class | CommandOutputBinding Class |
| CommandOutputParameter-class | CommandOutputParameter Class |
| CommandOutputSchema-class | CommandOutputSchema |
| convert_app | Convert App or a CWL JSON file to Tool or Flow object |
| CWL | Class CWL |
| cwl-utils | Get class from CWL JSON file |
| delete-methods | Delete files or folders |
| download-methods | Download files |
| DSCList | DSC list |
| Enum | Pre-defiend enums |
| Expression-class | Expression Class |
| ExpressionTool-class | ExpressionTool Class |
| File-class | FileList Class |
| Files-class | Class Files |
| Flow | Build workflow |
| FS-class | FS class |
| get_token | Opens web browser to copy the auth token |
| get_uploader | Download Seven Bridges command line uploader and extract to a... |
| Handler-class | Handler instance |
| input_output_matrix | Get input/output matrix out of JSON CWL file directly |
| Item-class | Class Item |
| link | link two nodes to form a new Workflow |
| link_what | List possible linking methods |
| Metadata | Meta schema |
| Parameter | Paramter class (reference class) |
| Process | Process Class |
| ProcessRequirement | ProcessRequirement Class |
| project_details | Returns the details of the project |
| project_members | Returns a list of all users invited to the project and their... |
| requirements | Rabix specifc Requirements |
| response-methods | Get raw response from an Item object |
| sbg_get_env | Set authentication environment variables for Seven Bridges... |
| sbg_set_env | Set authentication environment variables for Seven Bridges... |
| Schema | SchemaList |
| setListClass | List Class generator. |
| set_test_env | Set testing env |
| sevenbridges-package | Seven Bridges Platform API Client and CWL Tool Builder in R |
| shorthand-cwl | Shorthand functions for cwl packages constructors |
| status_check | Check request status |
| tag-methods | Set file tags |
| TaskHook | set task function hook |
| test_tool_bunny | Test tools in rabix/bunny |
| test_tool_cwlrun | Test tools with cwl-runner |
| test_tool_rabix | Test tools in rabix/rabix-devel (DEPRECATED) |
| Tool-class | Class Tool |
| upload_complete_all | Reports the complete file upload |
| upload_complete_part | Reports the completion of the part upload |
| upload_delete | Abort the upload |
| upload_info | Returns upload information for the ongoing upload |
| upload_info_part | Returns AWS S3 signed URL for a part of the file upload |
| upload_init | Initializes the upload of the specified file |
| Workflow | Workflow |
| WorkflowStep | WorkflowStepInputList |
