Files in sbg/sevenbridges-r

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

.Rbuildignore

.gitattributes

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

NEWS.md R/api-http.R R/api-misc.R R/api-utils.R R/class-all.R R/class-app.R R/class-auth-utils.R R/class-auth.R R/class-billing.R R/class-cwl.R R/class-division.R R/class-files.R R/class-filesystem.R R/class-flow.R R/class-item.R R/class-marker.R R/class-member.R R/class-meta.R R/class-project.R R/class-ratelimit.R R/class-task.R R/class-team.R R/class-teammember.R R/class-tool.R R/class-upload.R R/class-user.R R/class-volume.R R/misc-handler.R R/misc-lift.R R/misc-uploader.R R/sevenbridges-package.R R/zzz.R README.md

_pkgdown.yml

docs/404.html

docs/LICENSE-text.html

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docs/articles/api.html

docs/articles/api_files/header-attrs-2.1/header-attrs.js

docs/articles/api_files/header-attrs-2.2/header-attrs.js

docs/articles/api_files/header-attrs-2.3/header-attrs.js

docs/articles/api_files/header-attrs-2.4/header-attrs.js

docs/articles/apps.html

docs/articles/apps_files/header-attrs-2.1/header-attrs.js

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docs/articles/apps_files/header-attrs-2.3/header-attrs.js

docs/articles/apps_files/header-attrs-2.4/header-attrs.js

docs/articles/bioc-workflow.html

docs/articles/bioc-workflow_files/header-attrs-2.1/header-attrs.js

docs/articles/bioc-workflow_files/header-attrs-2.2/header-attrs.js

docs/articles/bioc-workflow_files/header-attrs-2.3/header-attrs.js

docs/articles/bioc-workflow_files/header-attrs-2.4/header-attrs.js

docs/articles/cgc-datasets.html

docs/articles/cgc-datasets_files/header-attrs-2.1/header-attrs.js

docs/articles/cgc-datasets_files/header-attrs-2.2/header-attrs.js

docs/articles/cgc-datasets_files/header-attrs-2.3/header-attrs.js

docs/articles/cgc-datasets_files/header-attrs-2.4/header-attrs.js

docs/articles/docker.html

docs/articles/docker_files/header-attrs-2.1/header-attrs.js

docs/articles/docker_files/header-attrs-2.2/header-attrs.js

docs/articles/docker_files/header-attrs-2.3/header-attrs.js

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docs/articles/index.html

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docs/articles/rstudio_files/header-attrs-2.1/header-attrs.js

docs/articles/rstudio_files/header-attrs-2.2/header-attrs.js

docs/articles/rstudio_files/header-attrs-2.3/header-attrs.js

docs/articles/rstudio_files/header-attrs-2.4/header-attrs.js

docs/articles/sevenbridges.css

docs/authors.html

docs/bootstrap-toc.css

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docs/pkgdown.css

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docs/pkgdown.yml

docs/reference/App-class.html

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docs/reference/Binding.html

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docs/reference/Flow.html

docs/reference/Handler-class.html

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docs/reference/set_test_env.html

docs/reference/sevenbridges-package.html

docs/reference/shorthand-cwl.html

docs/reference/status_check.html

docs/reference/tag-methods.html

docs/reference/test_tool_bunny.html

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inst/docker/reporttool/Dockerfile

inst/docker/reporttool/rabix/generator.R

inst/docker/reporttool/rabix/reporttool.json

inst/docker/reporttool/src/report.R

inst/docker/rnaseqGene/Dockerfile

inst/docker/rnaseqGene/rabix/generator.R

inst/docker/rnaseqGene/rabix/rnaseqGene.json

inst/docker/rnaseqGene/report/rnaseqGene.Rmd inst/docker/rnaseqGene/src/performDE.R

inst/docker/sevenbridges/Dockerfile

inst/docker/sevenbridges/rabix/generator.R

inst/docker/sevenbridges/rabix/runif.json

inst/docker/sevenbridges/rabix/runif2.json

inst/docker/sevenbridges/report/report.Rmd inst/docker/sevenbridges/src/runif.R inst/docker/sevenbridges/src/runif2spin.R inst/docker/sevenbridges/src/runif_args.R

inst/docker/sevenbridges/src/shiny-server.conf

inst/docker/sevenbridges/src/shiny-server.sh

inst/docker/sevenbridges/src/supervisord.conf

inst/docker/testenv/Dockerfile

inst/extdata/app/dna2protein/README.md

inst/extdata/app/dna2protein/data/input.txt

inst/extdata/app/dna2protein/dna2protein.cwl.json

inst/extdata/app/dna2protein/inputs.json

inst/extdata/app/dna2protein/transcribe.cwl.json

inst/extdata/app/dna2protein/translate.cwl.json

inst/extdata/app/flow_star.json

inst/extdata/app/tool_star.json

inst/extdata/app/tool_unpack_fastq.json

inst/extdata/bam_index.json

inst/extdata/download.txt

inst/extdata/runif.json

inst/extdata/sample1.fastq

inst/extdata/sample1.fastq.meta

inst/extdata/test-easy-api.R inst/liftr/runif.Rmd man/App-class.Rd man/Auth-class.Rd man/Binding.Rd man/CCBList.Rd man/CWL.Rd man/CommandInputParameter-class.Rd man/CommandInputSchema-class.Rd man/CommandLineBinding-class.Rd man/CommandLineTool.Rd man/CommandOutputBinding-class.Rd man/CommandOutputParameter-class.Rd man/CommandOutputSchema-class.Rd man/DSCList.Rd man/Enum.Rd man/Expression-class.Rd man/ExpressionTool-class.Rd man/FS-class.Rd man/File-class.Rd man/Files-class.Rd man/Flow.Rd man/Handler-class.Rd man/Item-class.Rd man/Metadata.Rd man/Parameter.Rd man/Process.Rd man/ProcessRequirement.Rd man/Schema.Rd man/TaskHook.Rd man/Tool-class.Rd man/Workflow.Rd man/WorkflowStep.Rd man/addIdNum.Rd man/api.Rd man/as-methods.Rd man/batch.Rd man/cli_list_projects.Rd man/cli_list_tags.Rd man/cli_upload.Rd man/convert_app.Rd man/cwl-utils.Rd man/delete-methods.Rd man/download-methods.Rd man/get_token.Rd man/get_uploader.Rd man/input_output_matrix.Rd man/link.Rd man/link_what.Rd man/project_details.Rd man/project_members.Rd man/requirements.Rd man/response-methods.Rd man/sbg_get_env.Rd man/sbg_set_env.Rd man/setListClass.Rd man/set_test_env.Rd man/sevenbridges-package.Rd man/shorthand-cwl.Rd man/status_check.Rd man/tag-methods.Rd man/test_tool_bunny.Rd man/test_tool_cwlrun.Rd man/test_tool_rabix.Rd man/upload_complete_all.Rd man/upload_complete_part.Rd man/upload_delete.Rd man/upload_info.Rd man/upload_info_part.Rd man/upload_init.Rd

pkgdown/extra.css

pkgdown/favicon/apple-touch-icon-120x120.png

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pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

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pkgdown/favicon/favicon.ico

sevenbridges.Rproj

tests/testthat.R tests/testthat/test-easy-Auth.R tests/testthat/test-test_tools.R vignettes/api.Rmd vignettes/apps.Rmd vignettes/bioc-workflow.Rmd vignettes/cgc-datasets.Rmd vignettes/docker.Rmd

vignettes/fig/bwa-mem.png

vignettes/fig/diagram_rnaseq.png

vignettes/rstudio.Rmd

vignettes/sevenbridges.css

sbg/sevenbridges-r documentation built on March 26, 2021, 3:33 p.m.