inst/shiny-examples/sAUC/www/ui.md
In sbohora/sAUC: Semi-parametric Area Under the Curve (AUC) regression
title: "Below is the ui.R code"
author: "Som Bohora"
date: "July 17, 2017"
output:
html_document:
keep_md: true
Below is the ui.R code
library(shiny)
library(shinydashboard)
library(shinyjs)
source("globals.R")
header <- dashboardHeader(
title = tags$a(tags$p(strong(style ="font-size: 24px;color: white","Semiparametric Area Under the Curve (sAUC) Regression Model with Discrete Covariates")), href = "https://github.com/sbohora/sAUC", target ="_blank"),
disable = FALSE,
titleWidth = "1500px",
dropdownMenu(
type = "messages",
# messageItem(
# from = "Som",
# message = "Stay tuned."),
# messageItem(
# from = "New User",
# message = "How do I register?",
# icon = icon("question"),
# time = "13:45"),
messageItem(
from = "Support",
message = "The new server is ready.",
icon = icon("life-ring"),
time = "2017-08-01")),
dropdownMenu(
type = "notifications",
notificationItem(
text = "5 new uers today",
icon = icon("users")),
# notificationItem(
# text = "12 items delivered",
# icon("truck"),
# status = "success"),
notificationItem(
text = "Server load at 86%",
icon = icon("exclamation-triangle"),
status = "warning")),
dropdownMenu(
type = "task",
badgeStatus = "success",
taskItem(value = 90,
color = "aqua","Documention"),
taskItem(value = 75, color = "yellow","Server deployment")
))
# Define the overall UI
dashboardPage(
# skin = "green",
header = header,
title = "sAUC",
dashboardSidebar(
disable = FALSE,
sidebarMenu(
id = "sidebar_menu",
# menuItem(
# text = "Introduction",
# tabName = "intro",
# icon = icon("book")),
menuItem(
text = "AUC Regression in R",
tabName = "auc_reg",
badgeLabel = "Perform",
icon = icon("bar-chart")),
menuItem(
text = "sAUC in R",
tabName = "example",
badgeLabel = "Example",
icon = icon("book")),
menuItem(
text = "AUC Simulation in R",
tabName = "auc_simulate",
icon = icon("line-chart"),
badgeLabel = "Perform",
badgeColor = "green"),
menuItem(
text = "Source Code (Shiny R)",
tabName = "get_code",
# href = "https://github.com/sbohora/sAUC/tree/master/inst/shiny",
icon = icon("code"),
menuSubItem(
text = "server.R",
tabName = "server_code"),
menuSubItem(
text = "ui.R",
tabName = "ui_code"),
menuSubItem(
text = "globals.R",
tabName = "global_code")
),
menuItem(
text = "sAUC in Python",
tabName = "sauc_python",
badgeLabel = "Example",
icon = icon("file-code-o")),
menuItem(
text = "sAUC in Julia",
tabName = "sauc_julia",
badgeLabel = "Example",
icon = icon("code")),
menuItem(
text = "About Me",
tabName = "about_me",
icon = icon("picture-o")),
menuItem(
text = "Feedback",
tabName = "feedback",
icon = icon("comment-o")),
menuItem(
text = "Discussion Board",
tabName = "disqus_here",
icon = icon("info")),
sidebarMenuOutput("menu"),
tags$hr(),
menuItem(
text = "",
href = "https://github.com/sbohora/sAUC",
badgeLabel = "Github Repo for sAUC package",
icon = icon("github")
),
menuItem(
text = "",
href = "https://sbohora.github.io/sAUC",
badgeLabel = "Web site for sAUC package",
icon = icon("tv")
),
tags$hr(),
menuItem(
text = "Contact Me",
tabName = "contact",
icon = icon("volume-control-phone")),
tags$body(
a(
class = "addtwitter",
href = "https://twitter.com/SomBohora",
target = "_blank",
img(src = "twitter-logo.png", height="30", width="30")
),
a(
class = "addemail",
href = "mailto:energeticsom@gmail.com",
img(src = "email-logo.png", height="30", width="30")
),
a(
class = "addgithub",
href = "https://github.com/sbohora",
target = "_blank",
img(src = "github-logo.png", height="30", width="30")
)
),
sidebarSearchForm(
textId = "searchText",
buttonId = "searchButton",
label = "Search..."
)
)
),
dashboardBody(
shinyjs::useShinyjs(),
tags$head(
tags$link(rel = "stylesheet", type = "text/css", href = "custom.css")),
tags$style(type="text/css",
".shiny-output-error { visibility: hidden; }",
".shiny-output-error:before { visibility: hidden; }"
),
tabItems(
tabItem(
tabName = "auc_simulate",
fluidRow(
column(
width = 3,
box(
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
title = tags$p(strong(style ="font-size: 18px;",
"Enter parameters for simulating a model with one covariate with 3 levels")),
width = 12L,
height = 8L,
background = NULL,
numericInput(
inputId = "realization",
label = "Number of Realizations",
value = 100),
sliderInput(
inputId = "number_treatment",
label = "Number of Observations in Treatment Group: ", 1, 1000, 20),
sliderInput(
inputId = "number_control",
label = "Number of Observations in Control Group: ", 1, 1000, 30)
)
),
column(
width = 3,
box(
title = tags$p(strong(style ="font-size: 18px;","True regression parameters")),
width = NULL,
background = NULL,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
p("Below are the true parameter values for the current simulation. You can change 'em if you want."),
numericInput(
inputId = "b0",
label = HTML("True value of β<sub>0</sub>:"),
value = 0.15),
numericInput(
inputId = "b1",
label = HTML("True value of β<sub>1</sub>:"),
value = 0.50),
numericInput(
inputId = "b2",
label = HTML("True value of β<sub>2</sub>:"),
value = 1.00)
)
),
column(
width = 6,
box(
title = tags$p(strong(style ="font-size: 18px;","Result of Simulation")),
width = 15,
div(style = 'overflow-x: scroll', DT::dataTableOutput('result1')),
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL)
# p(class = 'text-center', downloadButton('download_simu_result', 'Download Simulation Results'))
)
),
fluidRow(
column(
width = 12,
box(
title = "Distribution of beta estimates from the above simulation",
width = 15,
div(style = 'overflow-x: scroll', plotOutput('result_plot_beta')),
background = "red",
collapsible = TRUE,
solidHeader = TRUE,
status = "info"),
div(style= 'display:inline-block', downloadButton('download_simu_plot', 'Download Simulation Plot'), style="float:right",
style= 'display:inline-block', downloadButton('download_simu_result', 'Download Simulation Results'), style="float:right")
# p(class = 'text-center', downloadButton('download_simu_plot', 'Download Simulation Plot'))
)
)
),
tabItem(
tabName = "auc_reg",
fluidRow(
column(
width = 3,
box(
title="File upload",
width = 12,
# height = "500px",
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
fileInput("file", "Upload a data file (for e.g. CSV) to be analyzed"),
shinyjs::hidden(actionButton("reset_file", HTML("Warning <br> You should reset analysis before uploading a file."), style = "color: red;font-size:105%;background-color: white;")),
shinyjs::hidden(actionButton("reset", "Reset Analysis", style = "color: white;
background-color: red;")),
helpText("Default maximum file size is 5MB."),
helpText("Input data formats can be comma, semicolon, tab or space delimited."),
h5(helpText("Select the read.table parameters below")),
checkboxInput(
inputId = 'header',
label = "Header TRUE?",
value = TRUE),
checkboxInput(
inputId = 'string_factors',
label = "String as Factors?",
value = FALSE),
radioButtons(
inputId = 'sep',
label = 'Separator',
choices = c(Comma = ",",
Semicolon = ';',
Tab = '\t', Space=''),
selected = ',',
inline = TRUE)
),
div(id = "box_inbuilt_data",
box(
title="Use a dataset within sAUC package",
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
checkboxInput(
inputId = 'use_inbuilt_data',
label = 'Would you like to use FASD dataset from sAUC package for trial?',
value = FALSE)
# radioButtons(
# inputId = 'use_inbuilt_data',
# label = 'Would you like to use a FASD dataset from sAUC package for trial?',
# choices = list("Yes", "No"), selected = "No")
))
),
column(
width = 9,
status = "info",
uiOutput("describe_file"),
htmlOutput("add_about_sauc")
# tabBox(
# tabPanel("Histogram",
# fluidRow(
# column(4, plotOutput("hist_plot")),
# column(8, plotOutput("bar_plot")))),
)),
br(),
shinyjs::hidden(
fluidRow(
id = "show_model",
column(
width = 3,
box(footer = tags$p(strong(style = "font-size: 12px;color:red", "* = required arguments.")),
title = tags$p(strong(style ="font-size: 18px;color:green","Data analysis")),
width = 12,
solidHeader = TRUE,
collapsible = TRUE,
status = "warning",
uiOutput("choose_response"),
uiOutput("choose_group"),
uiOutput("independent")
)
),
column(
width = 5,
box(
title = tags$p(strong(style ="font-size: 18px;color: green","Model Results")),
width = 14,
collapsible = TRUE,
solidHeader = TRUE,
status = "warning",
DT::dataTableOutput("model_result")
),
div(style= 'display:inline-block', downloadButton('download_data', 'Download Data'), style="float:right",
style= 'display:inline-block', downloadButton('download_model_result', 'Download Model Results'), style="float:right",
style= 'display:inline-block', downloadButton('download_roc_plot', 'Download ROC curve plot'), style="float:right",
style= 'display:inline-block', downloadButton('download_hist_plot', 'Download Histogram'), style="float:right",
style= 'display:inline-block', downloadButton('download_bar_plot', 'Download Bar Plot'), style="float:right")
),
column(
width = 4,
# box(
# # title = tags$p(strong(style ="font-size: 18px;color: green","ROC curve")),
# width = 14,
# height = 5,
# collapsible = TRUE,
# solidHeader = TRUE,
# status = "warning",
plotOutput("roc_plot", height = 350, width = 500)
# )
)
)
)),
tabItem(
tabName = "example",
fluidRow(
column(
width = 9,
box(
width = 20,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
title = "Example using Semiparametric AUC regression method",
background = NULL,
# includeMarkdown("example.md")
# includeHTML("server.html")
# HTML(markdown::markdownToHTML(knitr::knit('server.Rmd', quiet = FALSE)))
# includeHTML("example.html")
tags$iframe(src = 'example.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
)
)
)
),
tabItem(
tabName = "server_code",
fluidRow(
column(
width = 8,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("server.md")
tags$iframe(src = 'server.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
# includeHTML("example.html")
# HTML(markdown::markdownToHTML(knitr::knit('server.Rmd', quiet = FALSE)))
# tags$iframe(
# seamless = "seamless",
# style="height:400px; width:100%; scrolling=yes",
# src = "https://websitesetup.org/css3-cheat-sheet/")
)
)
)
),
tabItem(
tabName = "ui_code",
fluidRow(
column(
width = 8,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("ui.md")
tags$iframe(src = 'ui.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
# includeHTML("example.html")
)
)
)
),
tabItem(
tabName = "global_code",
fluidRow(
column(
width = 8,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("ui.md")
tags$iframe(src = 'globals.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
# includeHTML("example.html")
)
)
)
),
tabItem(
tabName = "sauc_python",
fluidRow(
column(
width = 9,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("server.md")
tags$iframe(src = 'example-python.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
)
)
)
),
tabItem(
tabName = "sauc_julia",
fluidRow(
column(
width = 9,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("server.md")
tags$iframe(src = 'example-julia.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
)
)
)
),
tabItem(
tabName = "about_me",
fluidRow(
column(
width = 4,
box(
title = "This is about me",
width = 12,
status = "primary",
background = "navy",
collapsible = TRUE,
solidHeader = TRUE,
# p("This is about me.", style = "font-size:120%"),
# tags$a(href = "http://ouhsc.edu/bbmc/team/", img(src = "som.jpg", height = 200, width = 200), target ="_blank")
br(),
br(),
span("I am Som and am a Biostatistician at ",
span(tags$a(href = "http://ouhsc.edu/bbmc/team/", "The Department of Pediatrics, The University of Oklahoma Health Sciences Center. ", target ="_blank"),
style = "color:blue"),
"I received my MApStat and MS in Biostatistics from LSU and OUHSC, respectively. In addition to BBMC, I work as a statistician and data programmer
in a number of pediatric research projects. I was trained in biostatistics and epidemiology, and has research experience in Fetal Alcohol Spectrum
Disorders (FASD), HIV/AIDS clinical trials and child maltreatment prevention. I am interested in the applications of statistical computing and simulation,
data analytics, dynamic reporting, and real-time data decision making. I use mainly R, Python, and Julia programming languages.", style = "font-size:130%"),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br()
# downloadLink("download_cv", p("Download my CV", style = "font-size:130%"))
)
),
column(
width = 8,
fluidRow(
# box(
# title = "I like mornings",
# width = 12,
# height = 15,
# status = "primary",
# background = "navy",
# collapsible = TRUE,
# solidHeader = TRUE,
tabBox(width = 12,
tabPanel(
title = "I like mornings",
# p("This is about me.", style = "font-size:100%"),
tags$a(href = "http://ouhsc.edu/bbmc/team/", img(src = "nature.jpg", height = 700, width = 1050), target ="_blank")
)
))
)
)
),
tabItem(
tabName = "feedback",
fluidRow(
column(
width = 4,
box(
width = 20,
height = 20,
title = "Feedback Form",
status = "info",
background = NULL,
collapsible = TRUE,
solidHeader = TRUE,
htmlOutput("googleForm")
)
),
column(
width = 4,
box(
width = 20,
height = 20,
title = "Selected Comments",
status = "info",
background = NULL,
collapsible = TRUE,
solidHeader = TRUE,
div(style = 'overflow-x: scroll', DT::dataTableOutput('googleFormData')),
actionButton("refresh", "Refresh Sheet")
)
),
column(
width = 4,
box(
width = 12,
title = "Contact me",
status = "info",
background = NULL,
# Valid colors are: red, yellow, aqua, blue, light-blue, green, navy, teal, olive, lime, orange, fuchsia, purple, maroon, black.
collapsible = TRUE,
solidHeader = TRUE,
span("I can be contacted at",
a("energeticsom@gmail.com", href = "mailto:energeticsom@gmail.com"),
br(),
br(),
p("Please report any bugs about the sAUC (R package)", span(tags$a(href = "https://github.com/sbohora/sAUC", "here",
target = "_blank"))),
br(),
br(),
br(),
br(),
br(),
p("Please report any bugs about the saucpy (python package)", span(tags$a(href = "https://github.com/sbohora/saucpy/", "here",
target = "_blank"))),
br(),
br(),
br(),
br(),
br(),
p("Please report any bugs about the SemiparametricAUC.jl (Julia package)", span(tags$a(href = "https://github.com/sbohora/SemiparametricAUC.jl/", "here",
target = "_blank"))),
br(),
br(),
br(),
br(),
br(),
em(
span("Created by "),
a("Som B. Bohora", href = "mailto:energeticsom@gmail.com"),
span(", July 2017"),
br(),
br()
), style = "font-size:140%; color:green")
)
)
)
),
tabItem(
tabName = "disqus_here",
strong(h3("This is a discussion board about sAUC", style = "color:blue", align="center")),
div(
id = "disqus_thread",
HTML(
"<script>
(function() {
var d = document, s = d.createElement('script');
s.src = '//sauc.disqus.com/embed.js';
s.setAttribute('data-timestamp', +new Date());
(d.head || d.body).appendChild(s);
})();
</script>
<noscript>Please enable JavaScript to view the <a href='https://disqus.com/?ref_noscript' rel='nofollow'>comments powered by Disqus.</a></noscript>"
)
)
)
),
div(HTML('<script id="dsq-count-scr" src="//sauc.disqus.com/count.js" async></script>'))
) #End the dashboardBody
) #End the dashboardPage
sbohora/sAUC documentation built on May 29, 2019, 3:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
title: "Below is the ui.R code"
author: "Som Bohora"
date: "July 17, 2017"
output: html_document: keep_md: true
Below is the ui.R code
library(shiny)
library(shinydashboard)
library(shinyjs)
source("globals.R")
header <- dashboardHeader(
title = tags$a(tags$p(strong(style ="font-size: 24px;color: white","Semiparametric Area Under the Curve (sAUC) Regression Model with Discrete Covariates")), href = "https://github.com/sbohora/sAUC", target ="_blank"),
disable = FALSE,
titleWidth = "1500px",
dropdownMenu(
type = "messages",
# messageItem(
# from = "Som",
# message = "Stay tuned."),
# messageItem(
# from = "New User",
# message = "How do I register?",
# icon = icon("question"),
# time = "13:45"),
messageItem(
from = "Support",
message = "The new server is ready.",
icon = icon("life-ring"),
time = "2017-08-01")),
dropdownMenu(
type = "notifications",
notificationItem(
text = "5 new uers today",
icon = icon("users")),
# notificationItem(
# text = "12 items delivered",
# icon("truck"),
# status = "success"),
notificationItem(
text = "Server load at 86%",
icon = icon("exclamation-triangle"),
status = "warning")),
dropdownMenu(
type = "task",
badgeStatus = "success",
taskItem(value = 90,
color = "aqua","Documention"),
taskItem(value = 75, color = "yellow","Server deployment")
))
# Define the overall UI
dashboardPage(
# skin = "green",
header = header,
title = "sAUC",
dashboardSidebar(
disable = FALSE,
sidebarMenu(
id = "sidebar_menu",
# menuItem(
# text = "Introduction",
# tabName = "intro",
# icon = icon("book")),
menuItem(
text = "AUC Regression in R",
tabName = "auc_reg",
badgeLabel = "Perform",
icon = icon("bar-chart")),
menuItem(
text = "sAUC in R",
tabName = "example",
badgeLabel = "Example",
icon = icon("book")),
menuItem(
text = "AUC Simulation in R",
tabName = "auc_simulate",
icon = icon("line-chart"),
badgeLabel = "Perform",
badgeColor = "green"),
menuItem(
text = "Source Code (Shiny R)",
tabName = "get_code",
# href = "https://github.com/sbohora/sAUC/tree/master/inst/shiny",
icon = icon("code"),
menuSubItem(
text = "server.R",
tabName = "server_code"),
menuSubItem(
text = "ui.R",
tabName = "ui_code"),
menuSubItem(
text = "globals.R",
tabName = "global_code")
),
menuItem(
text = "sAUC in Python",
tabName = "sauc_python",
badgeLabel = "Example",
icon = icon("file-code-o")),
menuItem(
text = "sAUC in Julia",
tabName = "sauc_julia",
badgeLabel = "Example",
icon = icon("code")),
menuItem(
text = "About Me",
tabName = "about_me",
icon = icon("picture-o")),
menuItem(
text = "Feedback",
tabName = "feedback",
icon = icon("comment-o")),
menuItem(
text = "Discussion Board",
tabName = "disqus_here",
icon = icon("info")),
sidebarMenuOutput("menu"),
tags$hr(),
menuItem(
text = "",
href = "https://github.com/sbohora/sAUC",
badgeLabel = "Github Repo for sAUC package",
icon = icon("github")
),
menuItem(
text = "",
href = "https://sbohora.github.io/sAUC",
badgeLabel = "Web site for sAUC package",
icon = icon("tv")
),
tags$hr(),
menuItem(
text = "Contact Me",
tabName = "contact",
icon = icon("volume-control-phone")),
tags$body(
a(
class = "addtwitter",
href = "https://twitter.com/SomBohora",
target = "_blank",
img(src = "twitter-logo.png", height="30", width="30")
),
a(
class = "addemail",
href = "mailto:energeticsom@gmail.com",
img(src = "email-logo.png", height="30", width="30")
),
a(
class = "addgithub",
href = "https://github.com/sbohora",
target = "_blank",
img(src = "github-logo.png", height="30", width="30")
)
),
sidebarSearchForm(
textId = "searchText",
buttonId = "searchButton",
label = "Search..."
)
)
),
dashboardBody(
shinyjs::useShinyjs(),
tags$head(
tags$link(rel = "stylesheet", type = "text/css", href = "custom.css")),
tags$style(type="text/css",
".shiny-output-error { visibility: hidden; }",
".shiny-output-error:before { visibility: hidden; }"
),
tabItems(
tabItem(
tabName = "auc_simulate",
fluidRow(
column(
width = 3,
box(
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
title = tags$p(strong(style ="font-size: 18px;",
"Enter parameters for simulating a model with one covariate with 3 levels")),
width = 12L,
height = 8L,
background = NULL,
numericInput(
inputId = "realization",
label = "Number of Realizations",
value = 100),
sliderInput(
inputId = "number_treatment",
label = "Number of Observations in Treatment Group: ", 1, 1000, 20),
sliderInput(
inputId = "number_control",
label = "Number of Observations in Control Group: ", 1, 1000, 30)
)
),
column(
width = 3,
box(
title = tags$p(strong(style ="font-size: 18px;","True regression parameters")),
width = NULL,
background = NULL,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
p("Below are the true parameter values for the current simulation. You can change 'em if you want."),
numericInput(
inputId = "b0",
label = HTML("True value of β<sub>0</sub>:"),
value = 0.15),
numericInput(
inputId = "b1",
label = HTML("True value of β<sub>1</sub>:"),
value = 0.50),
numericInput(
inputId = "b2",
label = HTML("True value of β<sub>2</sub>:"),
value = 1.00)
)
),
column(
width = 6,
box(
title = tags$p(strong(style ="font-size: 18px;","Result of Simulation")),
width = 15,
div(style = 'overflow-x: scroll', DT::dataTableOutput('result1')),
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL)
# p(class = 'text-center', downloadButton('download_simu_result', 'Download Simulation Results'))
)
),
fluidRow(
column(
width = 12,
box(
title = "Distribution of beta estimates from the above simulation",
width = 15,
div(style = 'overflow-x: scroll', plotOutput('result_plot_beta')),
background = "red",
collapsible = TRUE,
solidHeader = TRUE,
status = "info"),
div(style= 'display:inline-block', downloadButton('download_simu_plot', 'Download Simulation Plot'), style="float:right",
style= 'display:inline-block', downloadButton('download_simu_result', 'Download Simulation Results'), style="float:right")
# p(class = 'text-center', downloadButton('download_simu_plot', 'Download Simulation Plot'))
)
)
),
tabItem(
tabName = "auc_reg",
fluidRow(
column(
width = 3,
box(
title="File upload",
width = 12,
# height = "500px",
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
fileInput("file", "Upload a data file (for e.g. CSV) to be analyzed"),
shinyjs::hidden(actionButton("reset_file", HTML("Warning <br> You should reset analysis before uploading a file."), style = "color: red;font-size:105%;background-color: white;")),
shinyjs::hidden(actionButton("reset", "Reset Analysis", style = "color: white;
background-color: red;")),
helpText("Default maximum file size is 5MB."),
helpText("Input data formats can be comma, semicolon, tab or space delimited."),
h5(helpText("Select the read.table parameters below")),
checkboxInput(
inputId = 'header',
label = "Header TRUE?",
value = TRUE),
checkboxInput(
inputId = 'string_factors',
label = "String as Factors?",
value = FALSE),
radioButtons(
inputId = 'sep',
label = 'Separator',
choices = c(Comma = ",",
Semicolon = ';',
Tab = '\t', Space=''),
selected = ',',
inline = TRUE)
),
div(id = "box_inbuilt_data",
box(
title="Use a dataset within sAUC package",
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
checkboxInput(
inputId = 'use_inbuilt_data',
label = 'Would you like to use FASD dataset from sAUC package for trial?',
value = FALSE)
# radioButtons(
# inputId = 'use_inbuilt_data',
# label = 'Would you like to use a FASD dataset from sAUC package for trial?',
# choices = list("Yes", "No"), selected = "No")
))
),
column(
width = 9,
status = "info",
uiOutput("describe_file"),
htmlOutput("add_about_sauc")
# tabBox(
# tabPanel("Histogram",
# fluidRow(
# column(4, plotOutput("hist_plot")),
# column(8, plotOutput("bar_plot")))),
)),
br(),
shinyjs::hidden(
fluidRow(
id = "show_model",
column(
width = 3,
box(footer = tags$p(strong(style = "font-size: 12px;color:red", "* = required arguments.")),
title = tags$p(strong(style ="font-size: 18px;color:green","Data analysis")),
width = 12,
solidHeader = TRUE,
collapsible = TRUE,
status = "warning",
uiOutput("choose_response"),
uiOutput("choose_group"),
uiOutput("independent")
)
),
column(
width = 5,
box(
title = tags$p(strong(style ="font-size: 18px;color: green","Model Results")),
width = 14,
collapsible = TRUE,
solidHeader = TRUE,
status = "warning",
DT::dataTableOutput("model_result")
),
div(style= 'display:inline-block', downloadButton('download_data', 'Download Data'), style="float:right",
style= 'display:inline-block', downloadButton('download_model_result', 'Download Model Results'), style="float:right",
style= 'display:inline-block', downloadButton('download_roc_plot', 'Download ROC curve plot'), style="float:right",
style= 'display:inline-block', downloadButton('download_hist_plot', 'Download Histogram'), style="float:right",
style= 'display:inline-block', downloadButton('download_bar_plot', 'Download Bar Plot'), style="float:right")
),
column(
width = 4,
# box(
# # title = tags$p(strong(style ="font-size: 18px;color: green","ROC curve")),
# width = 14,
# height = 5,
# collapsible = TRUE,
# solidHeader = TRUE,
# status = "warning",
plotOutput("roc_plot", height = 350, width = 500)
# )
)
)
)),
tabItem(
tabName = "example",
fluidRow(
column(
width = 9,
box(
width = 20,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
title = "Example using Semiparametric AUC regression method",
background = NULL,
# includeMarkdown("example.md")
# includeHTML("server.html")
# HTML(markdown::markdownToHTML(knitr::knit('server.Rmd', quiet = FALSE)))
# includeHTML("example.html")
tags$iframe(src = 'example.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
)
)
)
),
tabItem(
tabName = "server_code",
fluidRow(
column(
width = 8,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("server.md")
tags$iframe(src = 'server.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
# includeHTML("example.html")
# HTML(markdown::markdownToHTML(knitr::knit('server.Rmd', quiet = FALSE)))
# tags$iframe(
# seamless = "seamless",
# style="height:400px; width:100%; scrolling=yes",
# src = "https://websitesetup.org/css3-cheat-sheet/")
)
)
)
),
tabItem(
tabName = "ui_code",
fluidRow(
column(
width = 8,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("ui.md")
tags$iframe(src = 'ui.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
# includeHTML("example.html")
)
)
)
),
tabItem(
tabName = "global_code",
fluidRow(
column(
width = 8,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("ui.md")
tags$iframe(src = 'globals.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
# includeHTML("example.html")
)
)
)
),
tabItem(
tabName = "sauc_python",
fluidRow(
column(
width = 9,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("server.md")
tags$iframe(src = 'example-python.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
)
)
)
),
tabItem(
tabName = "sauc_julia",
fluidRow(
column(
width = 9,
box(
width = 12,
collapsible = TRUE,
solidHeader = TRUE,
status = "info",
background = NULL,
# includeMarkdown("server.md")
tags$iframe(src = 'example-julia.html', # put .html to /www
width = '100%', height = '1000px',
frameborder = 0, scrolling = 'auto')
)
)
)
),
tabItem(
tabName = "about_me",
fluidRow(
column(
width = 4,
box(
title = "This is about me",
width = 12,
status = "primary",
background = "navy",
collapsible = TRUE,
solidHeader = TRUE,
# p("This is about me.", style = "font-size:120%"),
# tags$a(href = "http://ouhsc.edu/bbmc/team/", img(src = "som.jpg", height = 200, width = 200), target ="_blank")
br(),
br(),
span("I am Som and am a Biostatistician at ",
span(tags$a(href = "http://ouhsc.edu/bbmc/team/", "The Department of Pediatrics, The University of Oklahoma Health Sciences Center. ", target ="_blank"),
style = "color:blue"),
"I received my MApStat and MS in Biostatistics from LSU and OUHSC, respectively. In addition to BBMC, I work as a statistician and data programmer
in a number of pediatric research projects. I was trained in biostatistics and epidemiology, and has research experience in Fetal Alcohol Spectrum
Disorders (FASD), HIV/AIDS clinical trials and child maltreatment prevention. I am interested in the applications of statistical computing and simulation,
data analytics, dynamic reporting, and real-time data decision making. I use mainly R, Python, and Julia programming languages.", style = "font-size:130%"),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br(),
br()
# downloadLink("download_cv", p("Download my CV", style = "font-size:130%"))
)
),
column(
width = 8,
fluidRow(
# box(
# title = "I like mornings",
# width = 12,
# height = 15,
# status = "primary",
# background = "navy",
# collapsible = TRUE,
# solidHeader = TRUE,
tabBox(width = 12,
tabPanel(
title = "I like mornings",
# p("This is about me.", style = "font-size:100%"),
tags$a(href = "http://ouhsc.edu/bbmc/team/", img(src = "nature.jpg", height = 700, width = 1050), target ="_blank")
)
))
)
)
),
tabItem(
tabName = "feedback",
fluidRow(
column(
width = 4,
box(
width = 20,
height = 20,
title = "Feedback Form",
status = "info",
background = NULL,
collapsible = TRUE,
solidHeader = TRUE,
htmlOutput("googleForm")
)
),
column(
width = 4,
box(
width = 20,
height = 20,
title = "Selected Comments",
status = "info",
background = NULL,
collapsible = TRUE,
solidHeader = TRUE,
div(style = 'overflow-x: scroll', DT::dataTableOutput('googleFormData')),
actionButton("refresh", "Refresh Sheet")
)
),
column(
width = 4,
box(
width = 12,
title = "Contact me",
status = "info",
background = NULL,
# Valid colors are: red, yellow, aqua, blue, light-blue, green, navy, teal, olive, lime, orange, fuchsia, purple, maroon, black.
collapsible = TRUE,
solidHeader = TRUE,
span("I can be contacted at",
a("energeticsom@gmail.com", href = "mailto:energeticsom@gmail.com"),
br(),
br(),
p("Please report any bugs about the sAUC (R package)", span(tags$a(href = "https://github.com/sbohora/sAUC", "here",
target = "_blank"))),
br(),
br(),
br(),
br(),
br(),
p("Please report any bugs about the saucpy (python package)", span(tags$a(href = "https://github.com/sbohora/saucpy/", "here",
target = "_blank"))),
br(),
br(),
br(),
br(),
br(),
p("Please report any bugs about the SemiparametricAUC.jl (Julia package)", span(tags$a(href = "https://github.com/sbohora/SemiparametricAUC.jl/", "here",
target = "_blank"))),
br(),
br(),
br(),
br(),
br(),
em(
span("Created by "),
a("Som B. Bohora", href = "mailto:energeticsom@gmail.com"),
span(", July 2017"),
br(),
br()
), style = "font-size:140%; color:green")
)
)
)
),
tabItem(
tabName = "disqus_here",
strong(h3("This is a discussion board about sAUC", style = "color:blue", align="center")),
div(
id = "disqus_thread",
HTML(
"<script>
(function() {
var d = document, s = d.createElement('script');
s.src = '//sauc.disqus.com/embed.js';
s.setAttribute('data-timestamp', +new Date());
(d.head || d.body).appendChild(s);
})();
</script>
<noscript>Please enable JavaScript to view the <a href='https://disqus.com/?ref_noscript' rel='nofollow'>comments powered by Disqus.</a></noscript>"
)
)
)
),
div(HTML('<script id="dsq-count-scr" src="//sauc.disqus.com/count.js" async></script>'))
) #End the dashboardBody
) #End the dashboardPage
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