normalize: Normalization of biological samples by summar measure of...
In schaarschmidt/mixADA: Normalization, mixture models and screening cutpoints for anti-drug-antibody reactions
Description
Usage
Arguments
Value
Description
Within each experimental unit (run), biological observations to be used for model fitting (sampleID, unspiked) are normalized by means or medians of negative control observations from the same experimemntal unit
Usage
1
normalize(DATINT, normfun = "median", normop = "logdiff")
Arguments
DATINT
a data.frame as can be obtained by using adapcheckdatainput
normfun
name of the function to use for summarizing negative controls within each experimental runs current options: "mean", "median"
normop
character string naming options for normalizing biological samples (sampleID): current options:
"logdiff": natural log of the data and substract normfun of negative controls at log-scale,
"diff": substract normfun of negative controls,
"ratio": devide by normfun of negative controls.
Value
a list with
NORMDAT
a data.frame containing the original data as well as the normalized values
NORMINFO
character string to be used as description in the GUI
schaarschmidt/mixADA documentation built on May 29, 2019, 3:25 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Within each experimental unit (run), biological observations to be used for model fitting (sampleID, unspiked) are normalized by means or medians of negative control observations from the same experimemntal unit
Usage
1 | normalize(DATINT, normfun = "median", normop = "logdiff")
|
Arguments
DATINT |
a data.frame as can be obtained by using |
normfun |
name of the function to use for summarizing negative controls within each experimental runs current options: |
normop |
character string naming options for normalizing biological samples ( |
Value
a list with
NORMDAT |
a data.frame containing the original data as well as the normalized values |
NORMINFO |
character string to be used as description in the GUI |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.