Description Usage Arguments Details Value
For internal use in the mixADA GUI: Compute confirmatory cutoiunts (CCP) as percentiles of ratios or percent inhibition of soiked and unspiked samples.
1 2 3 |
fitk2 |
the object obtaiend from fitting a mixed effects mixture models using function xxx |
rdat |
the data set obtaiend from the normalization step, using function xxx |
ccplevel |
a single numeric value, ]0,1[, the level of the percentile to be computed |
resp |
a single character strinbg, providing the column name of the response variable in the data |
nrdefinition |
|
comparison |
a single character string, specifying the type of comparison between the spiked an unspiked samples of the same subject, with each run |
aggfun |
character string naming the function to be used for aggregating repeated observations of the same subject within a technical replication |
runsmodel |
character string naming the column in the data set whcih summarized the technical replications |
Repeated observations of each spiked an unspiked sample within each level of runsmodel
are summarized by aggfun
.
The resulting summary statistics are merged by sampleID
and runsmodel
For each of resulting pairs of spiked unspiked summary satistics for a given sampleID
and runsmodel
,
spiked/unspiked
or 100*(1 - spiked/unspiked)
is computed if comparison=="ratio"
or comparison=="percinhib"
, respectively.
For the resulting values, two-sided percentile intervals with joint level ccplevel
are computed for all sampleID
s, or only for the subset specified as non-reponder in fitk2
.
A list, use
DATCOMP |
a data.frame containing the chosen summary stats for spiked as well as unspiked samples within each run |
ynam |
character string naming the statistic used for comparing spiked and unspiked samples |
limtab |
a data.frame with estimated percentiles/ limits to be used as CCP |
comparison |
character string for labelling the output of the GUI |
infoccpmeasure |
character string for labelling the output of the GUI |
limitexplanation |
character string for labelling the output of the GUI |
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